In addition to Data Library templates, which are useful after the sequencer data has arrived in a Galaxy Data Library, Galaxy's sample tracking system includes sample run templates which are very similar to the Data Library templates, but are associated with a sample as it progresses through it's sequence run lifecycle in the facility. Sample run details templates are defined by the facility administrator. They can be created in the Admin view via the Manage form definitions menu link. On May 26, 2011, at 4:38 AM, Nate Coraor wrote:
Duddy, John wrote:
We'd like to be able to associate fixed things (project, Sample, sequencer used) with user's FASTQ files, and we'd also like to allow users to associate dynamic, site-specific stuff with the sequencing run. Currently, users track their runs using a CSV sample sheet, and often they add columns to that sample sheet for their own information.
Is it possible to associate that information with the FASTQ file when it is placed in Galaxy? I know about metadata, but the supported fields look like they are fixed in the code. I was hoping for a solution where the users do not need to modify the Galaxy code to pull this off.
Hi John,
You could accomplish this with library templates:
https://bitbucket.org/galaxy/galaxy-central/wiki/DataLibraries/LibraryTempla...
--nate
John Duddy Sr. Staff Software Engineer Illumina, Inc. 9885 Towne Centre Drive San Diego, CA 92121 Tel: 858-736-3584 E-mail: jduddy@illumina.com<mailto:jduddy@illumina.com>
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Greg Von Kuster Galaxy Development Team greg@bx.psu.edu