Hi,

I want to convert .bcl file (data from illumina NextSeq500) to fastq. Firstly, i tried Galaxy on public server and it became success. But i have large dataset and i couldnt wait for weeks to solve.

Then, i set up Galaxy locally. But most of tools dissappared in menu. I tried to upload published workflows but i had too many errors. I couldnt do any analysis on local host. 

What can i do now? 

Regards,

Ferhat GÜZEL