Hello Bjoern and Oliver.
Thank you for the emails.

I changed to testtoolshed, but recieved the following error with openms 1.2 (testtoolshed.g2.bx.psu.edu/repos/bgruening/openms/ec62782f6c68/openms):

CMake Error at libraries.cmake/boost.cmake:122 (message):
  Performing configuration checks



      - gcc visibility           : yes
      - long double support      : yes
      - has_icu builds           : yes



  Component configuration:



      - chrono                   : not building
      - context                  : not building
      - date_time                : building
      - exception                : not building
      - filesystem               : not building
      - graph                    : not building
      - graph_parallel           : not building
      - iostreams                : building
      - locale                   : not building
      - math                     : building
      - mpi                      : not building
      - program_options          : not building
      - python                   : not building
      - random                   : not building
      - regex                    : building
      - serialization            : not building
      - signals                  : not building
      - system                   : not building
      - test                     : not building
      - thread                   : not building
      - timer                    : not building
      - wave                     : not building



  ...patience...

  ...patience...

  ...found 23291 targets...

  ...updating 11320 targets...

  common.mkdir bin.v2/libs/date_time

  common.mkdir bin.v2/libs/iostreams

  common.mkdir bin.v2/libs/math/build

  common.mkdir bin.v2/libs/math/config/gcc-4.8/release

  common.mkdir bin.v2/libs/regex/build/gcc-4.8/release

  common.mkdir bin.v2/libs/math/config/gcc-4.8/debug/link-static

  common.mkdir bin.v2/libs/regex/build/gcc-4.8/debug/link-static

  common.mkdir
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/nondet_random.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/current_function.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/bimap.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/memory_order.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/intrusive_ptr.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/any.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/range.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/format.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/regex.h


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/type.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/cstdlib.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/bind.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/signals2.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/ref.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/scoped_array.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/visit_each.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/assign.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/smart_ptr.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/shared_ptr.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/asio.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/blank_fwd.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/shared_array.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/weak_ptr.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/wave.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/checked_delete.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/cast.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/function.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/signal.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/throw_exception.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/progress.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/none.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/make_shared.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/math_fwd.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/random.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/non_type.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/config.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/geometry.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/date_time.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/ratio.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/utility.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/parameter.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/multi_array.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/circular_buffer_fwd.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/local_function.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/concept_check.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/next_prior.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/crc.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/tokenizer.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/compressed_pair.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/variant.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/function_output_iterator.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/call_traits.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/dynamic_bitset.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/python.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/cerrno.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/preprocessor.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/multi_index_container.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/scope_exit.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/concept_archetype.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/foreach.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/type_traits.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/rational.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/signals.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/io_fwd.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/unordered_map.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/regex_fwd.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/none_t.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/noncopyable.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/blank.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/pointee.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/mpi.hpp


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  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/flyweight.hpp


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  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/exception_ptr.hpp


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  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/integer_traits.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/aligned_storage.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/cstdint.hpp


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  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/functional.hpp


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  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/multi_index_container_fwd.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/dynamic_bitset_fwd.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/get_pointer.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/is_placeholder.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/array.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/pointer_to_other.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/scoped_ptr.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/spirit.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/shared_container_iterator.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/static_assert.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/filesystem.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/swap.hpp


  ...on 100th target...

  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/foreach_fwd.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/pointer_cast.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/version.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/cregex.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/integer.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/implicit_cast.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/iterator_adaptors.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/mem_fn.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/assert.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/regex.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/last_value.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/function_equal.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/iterator.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/locale.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/operators.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/enable_shared_from_this.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/chrono.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/phoenix.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/optional.hpp


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  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/unordered_set.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/program_options.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/circular_buffer.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/generator_iterator.hpp


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  common.mkdir
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/intrusive


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  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/parameter


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  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/geometry


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  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/format


  common.mkdir
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/pool


  common.mkdir
  /home/lorencm/galaxy/files_tmp/t
..
bs/math/build/gcc-4.8/release/link-static/runtime-link-static/threading-multi/erff.o


  gcc.compile.c++
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  bin.v2/libs/math/build/gcc-4.8/release/link-static/runtime-link-static/threading-multi/fpclassifyl.o


  gcc.compile.c++
  bin.v2/libs/math/build/gcc-4.8/release/link-static/runtime-link-static/threading-multi/erfcl.o


  gcc.compile.c++
  bin.v2/libs/math/build/gcc-4.8/release/link-static/runtime-link-static/threading-multi/hypotl.o


  gcc.compile.c++
  bin.v2/libs/math/build/gcc-4.8/release/link-static/runtime-link-static/threading-multi/erfl.o


  gcc.compile.c++
  bin.v2/libs/math/build/gcc-4.8/release/link-static/runtime-link-static/threading-multi/llroundl.o


  gcc.compile.c++
  bin.v2/libs/math/build/gcc-4.8/release/link-static/runtime-link-static/threading-multi/log1pl.o


  gcc.compile.c++
  bin.v2/libs/math/build/gcc-4.8/release/link-static/runtime-link-static/threading-multi/lroundl.o


  gcc.compile.c++
  bin.v2/libs/math/build/gcc-4.8/release/link-static/runtime-link-static/threading-multi/cbrtl.o


  gcc.compile.c++
  bin.v2/libs/math/build/gcc-4.8/release/link-static/runtime-link-static/threading-multi/roundl.o


  common.mkdir
  bin.v2/libs/iostreams/build/gcc-4.8/release/link-static/threading-multi

  gcc.compile.c++
  bin.v2/libs/math/build/gcc-4.8/release/link-static/runtime-link-static/threading-multi/nextafterl.o


  gcc.compile.c++
  bin.v2/libs/math/build/gcc-4.8/release/link-static/runtime-link-static/threading-multi/truncl.o


  gcc.compile.c++
  bin.v2/libs/math/build/gcc-4.8/release/link-static/runtime-link-static/threading-multi/nexttowardl.o


  gcc.compile.c++
  bin.v2/libs/math/build/gcc-4.8/release/link-static/runtime-link-static/threading-multi/lgammal.o


  gcc.compile.c++
  bin.v2/libs/math/build/gcc-4.8/release/link-static/runtime-link-static/threading-multi/asinhf.o


  gcc.archive
  bin.v2/libs/math/build/gcc-4.8/release/link-static/runtime-link-static/threading-multi/libboost_math_c99f-mt-s.a


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/lib/libboost_math_c99f-mt-s.a


  gcc.compile.c++
  bin.v2/libs/math/build/gcc-4.8/release/link-static/runtime-link-static/threading-multi/tgammal.o


  gcc.compile.c++
  bin.v2/libs/iostreams/build/gcc-4.8/release/link-static/threading-multi/file_descriptor.o


  gcc.compile.c++
  bin.v2/libs/iostreams/build/gcc-4.8/release/link-static/file_descriptor.o

  gcc.compile.c++
  bin.v2/libs/iostreams/build/gcc-4.8/release/link-static/runtime-link-static/gzip.o


  gcc.compile.c++
  bin.v2/libs/iostreams/build/gcc-4.8/release/link-static/runtime-link-static/zlib.o


  common.mkdir bin.v2/libs/iostreams/build/gcc-4.8/debug

  common.mkdir bin.v2/libs/iostreams/build/gcc-4.8/debug/link-static

  common.mkdir
  bin.v2/libs/iostreams/build/gcc-4.8/debug/link-static/runtime-link-static

  gcc.compile.c++
  bin.v2/libs/iostreams/build/gcc-4.8/release/link-static/threading-multi/gzip.o


  gcc.compile.c++
  bin.v2/libs/iostreams/build/gcc-4.8/release/link-static/runtime-link-static/bzip2.o


  gcc.compile.c++
  bin.v2/libs/iostreams/build/gcc-4.8/release/link-static/runtime-link-static/mapped_file.o


  gcc.archive
  bin.v2/libs/iostreams/build/gcc-4.8/release/link-static/runtime-link-static/libboost_iostreams-s.a


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/lib/libboost_iostreams-s.a


  gcc.compile.c++
  bin.v2/libs/math/build/gcc-4.8/release/link-static/runtime-link-static/threading-multi/asinhl.o


  gcc.compile.c++
  bin.v2/libs/iostreams/build/gcc-4.8/release/link-static/threading-multi/zlib.o


  gcc.archive
  bin.v2/libs/math/build/gcc-4.8/release/link-static/runtime-link-static/threading-multi/libboost_math_c99l-mt-s.a


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/lib/libboost_math_c99l-mt-s.a


  ...on 11200th target...

  gcc.compile.c++
  bin.v2/libs/iostreams/build/gcc-4.8/release/link-static/threading-multi/bzip2.o


  common.mkdir
  bin.v2/libs/iostreams/build/gcc-4.8/debug/link-static/runtime-link-static/threading-multi


  common.mkdir
  bin.v2/libs/iostreams/build/gcc-4.8/debug/link-static/threading-multi

  gcc.compile.c++
  bin.v2/libs/iostreams/build/gcc-4.8/release/link-static/threading-multi/mapped_file.o


  gcc.archive
  gcc.compile.c++
  bin.v2/libs/iostreams/build/gcc-4.8/debug/link-static/threading-multi/file_descriptor.o


  gcc.compile.c++
  bin.v2/libs/iostreams/build/gcc-4.8/release/link-static/zlib.o

  gcc.compile.c++
  bin.v2/libs/iostreams/build/gcc-4.8/release/link-static/gzip.o

  gcc.compile.c++
  bin.v2/libs/iostreams/build/gcc-4.8/debug/link-static/runtime-link-static/gzip.o


  gcc.compile.c++
  bin.v2/libs/iostreams/build/gcc-4.8/debug/link-static/runtime-link-static/zlib.o


  gcc.compile.c++
  bin.v2/libs/iostreams/build/gcc-4.8/debug/link-static/runtime-link-static/bzip2.o


  gcc.compile.c++
  bin.v2/libs/iostreams/build/gcc-4.8/release/link-static/bzip2.o

  gcc.compile.c++
  bin.v2/libs/iostreams/build/gcc-4.8/debug/link-static/runtime-link-static/mapped_file.o


  gcc.archive
  bin.v2/libs/iostreams/build/gcc-4.8/release/link-static/libboost_iostreams.a


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/lib/libboost_iostreams.a


  gcc.archive
  bin.v2/libs/iostreams/build/gcc-4.8/debug/link-static/runtime-link-static/libboost_iostreams-sd.a


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/lib/libboost_iostreams-sd.a


  gcc.compile.c++
  bin.v2/libs/iostreams/build/gcc-4.8/debug/link-static/threading-multi/mapped_file.o


  gcc.compile.c++
  bin.v2/libs/iostreams/build/gcc-4.8/debug/link-static/threading-multi/zlib.o


  common.mkdir bin.v2/libs/date_time/build

  common.mkdir bin.v2/libs/date_time/build/gcc-4.8

  common.mkdir bin.v2/libs/date_time/build/gcc-4.8/release

  common.mkdir bin.v2/libs/date_time/build/gcc-4.8/release/link-static

  common.mkdir
  bin.v2/libs/date_time/build/gcc-4.8/release/link-static/runtime-link-static


  common.mkdir
  bin.v2/libs/date_time/build/gcc-4.8/release/link-static/runtime-link-static/threading-multi


  common.mkdir
  bin.v2/libs/date_time/build/gcc-4.8/release/link-static/runtime-link-static/threading-multi/gregorian


  gcc.compile.c++
  bin.v2/libs/iostreams/build/gcc-4.8/debug/link-static/threading-multi/gzip.o


  gcc.compile.c++
  bin.v2/libs/iostreams/build/gcc-4.8/debug/link-static/file_descriptor.o

  gcc.compile.c++
  bin.v2/libs/iostreams/build/gcc-4.8/debug/link-static/threading-multi/bzip2.o


  gcc.archive
  bin.v2/libs/iostreams/build/gcc-4.8/debug/link-static/threading-multi/libboost_iostreams-mt-d.a


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/lib/libboost_iostreams-mt-d.a


  common.mkdir
  bin.v2/libs/date_time/build/gcc-4.8/release/link-static/runtime-link-static/gregorian


  gcc.compile.c++
  bin.v2/libs/iostreams/build/gcc-4.8/debug/link-static/runtime-link-static/threading-multi/mapped_file.o


  gcc.compile.c++
  bin.v2/libs/date_time/build/gcc-4.8/release/link-static/runtime-link-static/threading-multi/gregorian/greg_weekday.o


  gcc.compile.c++
  bin.v2/libs/date_time/build/gcc-4.8/release/link-static/runtime-link-static/threading-multi/gregorian/date_generators.o


  common.mkdir
  bin.v2/libs/date_time/build/gcc-4.8/release/link-static/threading-multi

  gcc.compile.c++
  bin.v2/libs/iostreams/build/gcc-4.8/debug/link-static/runtime-link-static/threading-multi/zlib.o


  common.mkdir
  bin.v2/libs/date_time/build/gcc-4.8/release/link-static/threading-multi/gregorian


  common.mkdir
  bin.v2/libs/date_time/build/gcc-4.8/release/link-static/gregorian

  gcc.compile.c++
  bin.v2/libs/iostreams/build/gcc-4.8/debug/link-static/runtime-link-static/threading-multi/gzip.o


  gcc.compile.c++
  bin.v2/libs/date_time/build/gcc-4.8/release/link-static/runtime-link-static/gregorian/greg_weekday.o


  gcc.compile.c++
  bin.v2/libs/date_time/build/gcc-4.8/release/link-static/runtime-link-static/gregorian/date_generators.o


  gcc.compile.c++
  bin.v2/libs/iostreams/build/gcc-4.8/debug/link-static/runtime-link-static/threading-multi/bzip2.o


  gcc.archive
  bin.v2/libs/iostreams/build/gcc-4.8/debug/link-static/runtime-link-static/threading-multi/libboost_iostreams-mt-sd.a


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/lib/libboost_iostreams-mt-sd.a


  gcc.compile.c++
  bin.v2/libs/iostreams/build/gcc-4.8/debug/link-static/gzip.o

  common.mkdir bin.v2/libs/date_time/build/gcc-4.8/debug

  common.mkdir bin.v2/libs/date_time/build/gcc-4.8/debug/link-static

  common.mkdir
  bin.v2/libs/date_time/build/gcc-4.8/debug/link-static/runtime-link-static

  common.mkdir
  bin.v2/libs/date_time/build/gcc-4.8/debug/link-static/runtime-link-static/gregorian


  gcc.compile.c++
  bin.v2/libs/iostreams/build/gcc-4.8/debug/link-static/zlib.o

  gcc.compile.c++
  bin.v2/libs/iostreams/build/gcc-4.8/debug/link-static/mapped_file.o

  gcc.compile.c++
  bin.v2/libs/date_time/build/gcc-4.8/release/link-static/threading-multi/gregorian/greg_weekday.o


  common.mkdir
  bin.v2/libs/date_time/build/gcc-4.8/debug/link-static/runtime-link-static/threading-multi


  common.mkdir
  bin.v2/libs/date_time/build/gcc-4.8/debug/link-static/runtime-link-static/threading-multi/gregorian


  gcc.compile.c++
  bin.v2/libs/date_time/build/gcc-4.8/release/link-static/threading-multi/gregorian/date_generators.o


  gcc.compile.c++
  bin.v2/libs/iostreams/build/gcc-4.8/debug/link-static/bzip2.o

  gcc.archive
  bin.v2/libs/iostreams/build/gcc-4.8/debug/link-static/libboost_iostreams-d.a


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/lib/libboost_iostreams-d.a


  gcc.compile.c++
  bin.v2/libs/date_time/build/gcc-4.8/release/link-static/gregorian/date_generators.o


  common.mkdir
  bin.v2/libs/date_time/build/gcc-4.8/debug/link-static/threading-multi

  common.mkdir
  bin.v2/libs/date_time/build/gcc-4.8/debug/link-static/threading-multi/gregorian


  gcc.compile.c++
  bin.v2/libs/date_time/build/gcc-4.8/release/link-static/gregorian/greg_weekday.o


  gcc.compile.c++
  bin.v2/libs/date_time/build/gcc-4.8/debug/link-static/runtime-link-static/gregorian/date_generators.o


  gcc.compile.c++
  bin.v2/libs/date_time/build/gcc-4.8/debug/link-static/runtime-link-static/gregorian/greg_weekday.o


  common.mkdir
  bin.v2/libs/date_time/build/gcc-4.8/debug/link-static/gregorian

  gcc.compile.c++
  bin.v2/libs/date_time/build/gcc-4.8/debug/link-static/runtime-link-static/threading-multi/gregorian/date_generators.o


  gcc.compile.c++
  bin.v2/libs/date_time/build/gcc-4.8/debug/link-static/runtime-link-static/threading-multi/gregorian/greg_weekday.o


  gcc.compile.c++
  bin.v2/libs/date_time/build/gcc-4.8/debug/link-static/threading-multi/gregorian/date_generators.o


  gcc.compile.c++
  bin.v2/libs/date_time/build/gcc-4.8/debug/link-static/threading-multi/gregorian/greg_weekday.o


  gcc.compile.c++
  bin.v2/libs/date_time/build/gcc-4.8/debug/link-static/gregorian/date_generators.o


  gcc.compile.c++
  bin.v2/libs/date_time/build/gcc-4.8/debug/link-static/gregorian/greg_weekday.o


  gcc.compile.c++
  bin.v2/libs/date_time/build/gcc-4.8/release/link-static/runtime-link-static/threading-multi/gregorian/greg_month.o


  gcc.archive
  bin.v2/libs/date_time/build/gcc-4.8/release/link-static/runtime-link-static/threading-multi/libboost_date_time-mt-s.a


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/lib/libboost_date_time-mt-s.a


  gcc.compile.c++
  bin.v2/libs/date_time/build/gcc-4.8/debug/link-static/runtime-link-static/gregorian/greg_month.o


  gcc.archive
  bin.v2/libs/date_time/build/gcc-4.8/debug/link-static/runtime-link-static/libboost_date_time-sd.a


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/lib/libboost_date_time-sd.a


  gcc.compile.c++
  bin.v2/libs/date_time/build/gcc-4.8/debug/link-static/runtime-link-static/threading-multi/gregorian/greg_month.o


  gcc.compile.c++
  bin.v2/libs/date_time/build/gcc-4.8/release/link-static/runtime-link-static/gregorian/greg_month.o


  gcc.archive
  bin.v2/libs/date_time/build/gcc-4.8/release/link-static/runtime-link-static/libboost_date_time-s.a


  gcc.archive
  bin.v2/libs/date_time/build/gcc-4.8/debug/link-static/runtime-link-static/threading-multi/libboost_date_time-mt-sd.a


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/lib/libboost_date_time-s.a


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/lib/libboost_date_time-mt-sd.a


  gcc.compile.c++
  bin.v2/libs/date_time/build/gcc-4.8/debug/link-static/threading-multi/gregorian/greg_month.o


  gcc.archive
  bin.v2/libs/date_time/build/gcc-4.8/debug/link-static/threading-multi/libboost_date_time-mt-d.a


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/lib/libboost_date_time-mt-d.a


  gcc.compile.c++
  bin.v2/libs/date_time/build/gcc-4.8/release/link-static/gregorian/greg_month.o


  gcc.compile.c++
  bin.v2/libs/date_time/build/gcc-4.8/release/link-static/threading-multi/gregorian/greg_month.o


  gcc.archive
  bin.v2/libs/date_time/build/gcc-4.8/release/link-static/libboost_date_time.a


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/lib/libboost_date_time.a


  gcc.archive
  bin.v2/libs/date_time/build/gcc-4.8/release/link-static/threading-multi/libboost_date_time-mt.a


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/lib/libboost_date_time-mt.a


  gcc.compile.c++
  bin.v2/libs/date_time/build/gcc-4.8/debug/link-static/gregorian/greg_month.o


  ...on 11300th target...

  gcc.archive
  bin.v2/libs/date_time/build/gcc-4.8/debug/link-static/libboost_date_time-d.a


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/lib/libboost_date_time-d.a


  ...failed updating 126 targets...

  ...skipped 18 targets...

  ...updated 11176 targets...

Call Stack (most recent call first):
  CMakeLists.txt:461 (OPENMS_CONTRIB_BUILD_BOOST)

What did I do wrong?

Thank you in advance.

Mic


On Fri, Nov 6, 2015 at 1:13 AM, Björn Grüning <bjoern.gruening@gmail.com> wrote:
Hi Mic and Olivier,

if there is broader interest in OpenMS please let me know.
We have new wrappers and new installation instructions here:

https://github.com/bgruening/galaxytools/tree/master/tools/openms

+ pre-compiled binaries as this takes ages to compile.
Cheers,
Bjoern

Am 05.11.2015 um 15:24 schrieb Olivier CLAUDE:
> Hello Mic,
>
>
>
> You should try to change the link in the tool_dependencies.xml of openMS with this link :
>
>
>
>  <http://sourceforge.net/projects/open-ms/files/OpenMS/OpenMS-1.10/OpenMS-1.10.0.tar.gz/> http://sourceforge.net/projects/open-ms/files/OpenMS/OpenMS-1.10/OpenMS-1.10.0.tar.gz/
>
>
>
> and then repair the package
>
>
>
> regards,
>
>
>
> Olivier.
>
>
>
>
>
>
>
> De : galaxy-dev [mailto:galaxy-dev-bounces@lists.galaxyproject.org] De la part de Mic
> Envoyé : jeudi 5 novembre 2015 15:21
> À : galaxy-dev <galaxy-dev@lists.bx.psu.edu>
> Objet : [galaxy-dev] OpenMS caused Error downloading from URL
>
>
>
> Hello
>
> I tried to install OpenMS (toolshed.g2.bx.psu.edu/repos/galaxyp/openms/42b843627623/openms <http://toolshed.g2.bx.psu.edu/repos/galaxyp/openms/42b843627623/openms> ), but I have got the following error:
>
>
>
>  File "/home/lorencm/galaxy/lib/tool_shed/galaxy_install/install_manager.py", line 128, in install_and_build_package_via_fabric
>
>     tool_dependency = self.install_and_build_package( install_environment, tool_dependency, actions_dict )
>
>   File "/home/lorencm/galaxy/lib/tool_shed/galaxy_install/install_manager.py", line 86, in install_and_build_package
>
>     initial_download=True )
>
>   File "/home/lorencm/galaxy/lib/tool_shed/galaxy_install/tool_dependencies/recipe/recipe_manager.py", line 31, in execute_step
>
>     initial_download=initial_download )
>
>   File "/home/lorencm/galaxy/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py", line 694, in execute_step
>
>     dir = self.url_download( work_dir, downloaded_filename, url, extract=True, checksums=checksums )
>
>   File "/home/lorencm/galaxy/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py", line 187, in url_download
>
>     raise Exception( err_msg )
>
>
>
> Error downloading from URL
>
> http://downloads.sourceforge.net/project/open-ms/OpenMS/OpenMS-1.10.0/OpenMS-1.10.0.tar.gz:
>
> HTTP Error 404: Not Found
>
>
>
> Thank you in advance.
>
>
>
> Mic
>
>
>
>
> ___________________________________________________________
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