Hi galaxy community, I am quite new in galaxy but I would like to install a local instance on our cluster (SGE). I have a problem with DRMAA : When I activate the --daemon mode, the job don't pass in the queue system but with no Damon, it pass (the log below) The second problem is that $GALAXY_SLOTS is not define, Could it be related to the problem below ? Someone can help me, please ? (available at : https://help.galaxyproject.org/t/job-submission-failed-when-daemon/351) Thanks, Luc ## with no daemon galaxy.jobs.runners.drmaa DEBUG 2020-04-28 17:07:21,424 [p:32191,w:1,m:0] [DRMAARunner.work_thread-1] (47) submitting file /media/vol2/home/galaxy/galaxy/database/jobs_directory/000/47/galaxy_47.sh galaxy.jobs.runners.drmaa DEBUG 2020-04-28 17:07:21,425 [p:32191,w:1,m:0] [DRMAARunner.work_thread-1] (47) native specification is: -q cassava.q -pe snode 10 galaxy.jobs.runners.drmaa INFO 2020-04-28 17:07:21,440 [p:32191,w:1,m:0] [DRMAARunner.work_thread-1] (47) queued as 1007701 galaxy.jobs DEBUG 2020-04-28 17:07:21,441 [p:32191,w:1,m:0] [DRMAARunner.work_thread-1] (47) Persisting job destination (destination id: big_jobs) galaxy.jobs.runners.drmaa DEBUG 2020-04-28 17:07:22,042 [p:32191,w:1,m:0] [DRMAARunner.monitor_thread] (47/1007701) state change: job is queued and active ## with daemon galaxy.jobs.runners.drmaa DEBUG 2020-04-28 15:39:16,138 [p:26779,w:1,m:0] [DRMAARunner.work_thread-1] (45) submitting file /media/vol2/home/galaxy/galaxy/database/jobs_directory/000/45/galaxy_45.sh galaxy.jobs.runners.drmaa DEBUG 2020-04-28 15:39:16,138 [p:26779,w:1,m:0] [DRMAARunner.work_thread-1] (45) native specification is: -q cassava.q -pe snode 10 ## job_conf <?xml version="1.0"?> <!-- A sample job config that explicitly configures job running the way it is configured by default (if there is no explicit config). --> <job_conf> <plugins> <plugin id="local" type="runner" load="galaxy.jobs.runners.local:LocalJobRunner" workers="4"/> <plugin id="drmaa" type="runner" load="galaxy.jobs.runners.drmaa:DRMAAJobRunner"/> <param id="drmaa_library_path">/media/vol1/gridengine/lib/linux-x64/libdrmaa.so</param> </plugins> <destinations default="local"> <destination id="local" runner="local"/> <destination id="big_jobs" runner="drmaa"> <param id="nativeSpecification">-q cassava.q -pe snode 10</param> </destination> </destinations> <tools> <tool id="maker" destination="big_jobs" /> <tool id="metaspades" destination="big_jobs" /> </tools> </job_conf> ------------ Luc Cornet, PhD Bio-informatician Mycology and Aerobiology Sciensano