Hi Greg,<br>Thanks for the toolshed links I&#39;ll make sure to go over them.<br><br>I think when the upload failed, mercurial didn&#39;t get to the point of tracking the build folder. <br>From a mercurial point of view there seems to be no issue, pulling/cloning or even installing is fine because it&#39;s not tracked.<br>

<br>But the folder seems to be there when I go to &quot;Browse or delete repository tip files&quot; via the web interface.<br><br>From a user and our point of view this is isn&#39;t causing any usability issues at the moment, though it is weird.<br>

<br>Hope this clarifies things and thanks for the help!<br>Kevin.<br><br><div class="gmail_quote">On Wed, Sep 19, 2012 at 4:41 AM, Greg Von Kuster <span dir="ltr">&lt;<a href="mailto:greg@bx.psu.edu" target="_blank">greg@bx.psu.edu</a>&gt;</span> wrote:<br>

<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div style="word-wrap:break-word">Hello Kevin,<div><br></div><div><br></div><div><div><div class="im"><div>On Sep 14, 2012, at 3:48 AM, kevyin wrote:</div>

<br><blockquote type="cite">Hi,<br>I have a tool on the main galaxy toolshed called fastq_groomer_parallel.<br>During an update, with a new tar.gz upload I accidentally included in an unrelated big folder of stuff under the folder build/<br>

<br>The upload failed (with no helpful error message, only to turn on debug mode)<br>

I went and browsed the files via the web interface and the folder is there, but when I tried to delete it it says &quot;No changes to repository.  &quot;<br>Everything is normal, ie I can install this from a galaxy instance and the build/ folder is not there.<br>



when I hg pull and push etc the folder is not there. <br></blockquote><div><br></div></div>I&#39;m not sure how you were seeing anything related to a large folder named &quot;build&quot;.  Looking at you change log, I see the following changeset revisions, none of which include this folder.</div>

<div><br></div><div><div>
                            <label>Description:</label>
                            <a href="http://toolshed.g2.bx.psu.edu/repository/view_changeset?ctx_str=18a08d476d5e&amp;id=d0d30f5138c21420" target="_blank">First upload 0.3.0</a>
                        </div>
                        <div>
                            <label>Commit:</label>
                            <a href="http://toolshed.g2.bx.psu.edu/repository/view_changeset?ctx_str=18a08d476d5e&amp;id=d0d30f5138c21420" target="_blank">0:18a08d476d5e</a>
                        </div><div><b>added:</b>
                            <br><a href="http://toolshed.g2.bx.psu.edu/repository/view_changeset?ctx_str=18a08d476d5e&amp;id=d0d30f5138c21420#README" target="_blank">README</a>
                            <br><a href="http://toolshed.g2.bx.psu.edu/repository/view_changeset?ctx_str=18a08d476d5e&amp;id=d0d30f5138c21420#fastq_groomer_parallel.py" target="_blank">fastq_groomer_parallel.py</a>
                            <br><a href="http://toolshed.g2.bx.psu.edu/repository/view_changeset?ctx_str=18a08d476d5e&amp;id=d0d30f5138c21420#fastq_groomer_parallel.xml" target="_blank">fastq_groomer_parallel.xml</a></div>

<div><br></div><div><br></div><div><div>
                            <label>Description:</label>
                            <a href="http://toolshed.g2.bx.psu.edu/repository/view_changeset?ctx_str=2f394cd7db91&amp;id=d0d30f5138c21420" target="_blank">Deleted selected files</a>
                        </div>
                        <div>
                            <label>Commit:</label>
                            <a href="http://toolshed.g2.bx.psu.edu/repository/view_changeset?ctx_str=2f394cd7db91&amp;id=d0d30f5138c21420" target="_blank">1:2f394cd7db91</a>
                        </div><div><b>removed:</b>
                            <br><a href="http://toolshed.g2.bx.psu.edu/repository/view_changeset?ctx_str=2f394cd7db91&amp;id=d0d30f5138c21420#README" target="_blank">README</a>
                            <br><a href="http://toolshed.g2.bx.psu.edu/repository/view_changeset?ctx_str=2f394cd7db91&amp;id=d0d30f5138c21420#fastq_groomer_parallel.py" target="_blank">fastq_groomer_parallel.py</a>
                            <br><a href="http://toolshed.g2.bx.psu.edu/repository/view_changeset?ctx_str=2f394cd7db91&amp;id=d0d30f5138c21420#fastq_groomer_parallel.xml" target="_blank">fastq_groomer_parallel.xml</a></div>

<div><br></div><div><br></div><div><div>
                            <label>Description:</label>
                            <a href="http://toolshed.g2.bx.psu.edu/repository/view_changeset?ctx_str=cac848910bd8&amp;id=d0d30f5138c21420" target="_blank">Uploaded</a>
                        </div>
                        <div>
                            <label>Commit:</label>
                            <a href="http://toolshed.g2.bx.psu.edu/repository/view_changeset?ctx_str=cac848910bd8&amp;id=d0d30f5138c21420" target="_blank">2:cac848910bd8</a>
                        </div><div><b>added:</b>
                            <br><a href="http://toolshed.g2.bx.psu.edu/repository/view_changeset?ctx_str=cac848910bd8&amp;id=d0d30f5138c21420#README" target="_blank">README</a>
                            <br><a href="http://toolshed.g2.bx.psu.edu/repository/view_changeset?ctx_str=cac848910bd8&amp;id=d0d30f5138c21420#fastq_groomer_parallel.py" target="_blank">fastq_groomer_parallel.py</a>
                            <br><a href="http://toolshed.g2.bx.psu.edu/repository/view_changeset?ctx_str=cac848910bd8&amp;id=d0d30f5138c21420#fastq_groomer_parallel.xml" target="_blank">fastq_groomer_parallel.xml</a></div>

<div><br></div></div><div><br></div></div><div class="im"><blockquote type="cite"><br>I have another question with versioning. So far with my experimentation on the testtoolshed, The version is only bumped when I upload via an archive not when I push to the repo.<br>



Is this meant to be the case?<br></blockquote><div><br></div></div>This is probably not the case.  A new change set is created every time you make a change to the repository, either by uploading something new or by deleting one or more files.  Whenever a new change set is produced, it is associated with a revision number and string.  The following sections of the tool shed wiki may provide more clarification.</div>

<div><br></div><div><a href="http://wiki.g2.bx.psu.edu/Tool%20Shed#The_mercurial_repository_change_log" target="_blank">http://wiki.g2.bx.psu.edu/Tool%20Shed#The_mercurial_repository_change_log</a></div><div><a href="http://wiki.g2.bx.psu.edu/Tool%20Shed#Repository_revisions:_uploading_a_new_version_of_an_existing_tool" target="_blank">http://wiki.g2.bx.psu.edu/Tool%20Shed#Repository_revisions:_uploading_a_new_version_of_an_existing_tool</a></div>

<div><a href="http://wiki.g2.bx.psu.edu/Tool%20Shed#Repository_revisions:_valid_tool_versions" target="_blank">http://wiki.g2.bx.psu.edu/Tool%20Shed#Repository_revisions:_valid_tool_versions</a></div><div><br></div><div>
<br>
</div><div><div class="im"><br><blockquote type="cite">Also &quot;Get Updates&quot; to a toolshed tool as a galaxy Admin. doesnt seem to work, I basically have to install a new instance again, is this normal?<br></blockquote>

<div><br></div></div>It depends - the following section of the tool shed wiki should clarify this:</div><div><br></div><div><a href="http://wiki.g2.bx.psu.edu/Tool%20Shed#Getting_updates_for_tool_shed_repositories_installed_in_a_local_Galaxy_instance" target="_blank">http://wiki.g2.bx.psu.edu/Tool%20Shed#Getting_updates_for_tool_shed_repositories_installed_in_a_local_Galaxy_instance</a></div>

<span class="HOEnZb"><font color="#888888"><div><br></div><div>Greg Von Kuster</div></font></span><div class="im"><div><br></div><div><br><blockquote type="cite"><br>Regards,<br>Kevin.<br><br>
<br>
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