Peter, I have implemented a system that will explicitly exclude a defined list of repositories from the testing framework, so your repositories' tests should now be running. --Dave B. On 5/21/13 06:26:56.000, Peter Cock wrote:
On Mon, May 13, 2013 at 11:09 AM, Peter Cock <p.j.a.cock@googlemail.com> wrote:
I remain puzzled why I am seeing seemingly stochastic missing test results.
Hi Dave,
This continues - although I have been making progress with the tests for some of my tools. Currently there are a number of repositories reported as failing but I can't see the error (and so can't do much about fixing it):
http://testtoolshed.g2.bx.psu.edu/view/peterjc/blastxml_to_top_descr
http://testtoolshed.g2.bx.psu.edu/view/peterjc/clinod
http://testtoolshed.g2.bx.psu.edu/view/peterjc/get_orfs_or_cdss
http://testtoolshed.g2.bx.psu.edu/view/peterjc/seq_primer_clip
http://testtoolshed.g2.bx.psu.edu/view/peterjc/ncbi_blast_plus When previously visible this was due to a test framework limitation testing with composite output files: http://lists.bx.psu.edu/pipermail/galaxy-dev/2013-April/014365.html
Given I suspect a cache issue hiding the test failures, it might help if rather than the current text like "Time tested: ~ 8 hours ago" this could also state the date and time of the test (in UTC/GMT to avoid locale confusion).
Thanks,
Peter
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Other repositories failing with a clear error message:
http://testtoolshed.g2.bx.psu.edu/view/peterjc/tmhmm_and_signalp Missing dependencies, should have been skipped, see http://lists.bx.psu.edu/pipermail/galaxy-dev/2013-May/014748.html
http://testtoolshed.g2.bx.psu.edu/view/peterjc/mira_assembler Limitation of test framework, Trello issue open for this, http://lists.bx.psu.edu/pipermail/galaxy-dev/2013-April/014366.html
http://testtoolshed.g2.bx.psu.edu/view/peterjc/seq_rename Limitation of test framework, issue raised, http://lists.bx.psu.edu/pipermail/galaxy-dev/2013-May/014701.html
http://testtoolshed.g2.bx.psu.edu/view/peterjc/venn_list Missing an R/Bioconductor dependency, best practise for handling this has yet to be agreed.