Hi Peter, Gildas, This was due to a power supply failure which we've fixed this morning, so this should all be working now. Thanks, --nate On Mon, Dec 19, 2016 at 5:46 AM, Peter Briggs <peter.briggs@manchester.ac.uk
wrote:
Hello Gildas
I think the problem is more that the actual server isn't serving the packages that are already hosted there.
For example:
$ wget http://depot.galaxyproject.org/package/source/galaxy_sequenc e_utils/galaxy_sequence_utils-1.0.1-st.tgz ... <time passes> ... --2016-12-19 10:20:47-- (try:20) http://depot.galaxyproject.org /package/source/galaxy_sequence_utils/galaxy_sequence_utils-1.0.1-st.tgz Connecting to depot.galaxyproject.org (depot.galaxyproject.org)|128.118.250.14|:80... failed: Connection timed out. Giving up.
I tried this from a few different locations last week with the same result.
Best wishes
Peter
On 19/12/16 10:08, Gildas Le Corguillé wrote:
You can propose some updates (ie: URL) in this GitHub repo : https://github.com/galaxyproject/cargo-port
Cheers
Gildas
----------------------------------------------------------------- Gildas Le Corguillé - Bioinformatician/Bioanalyste
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Le 19 déc. 2016 à 10:42, Peter Briggs <peter.briggs@manchester.ac.uk
<mailto:peter.briggs@manchester.ac.uk>> a écrit :
Hello James
I think this might be a general problem with depot.galaxyproject.org <http://depot.galaxyproject.org> serving packages, as I've been
experiencing similar problems since Friday - attempts to fetch e.g.
http://depot.galaxyproject.org/package/source/galaxy_sequenc e_utils/galaxy_sequence_utils-1.0.1-st.tgz
also fail with timeouts.
I guess it needs someone from the the Galaxy project to take a look,
Best wishes
Peter
On 18/12/16 20:25, James Mullan wrote:
Hello,* * * * I am trying to install packages with dependencies from Galaxy Main tool shed. This worked Thursday and since Friday it no longer works for me. It seems this url is no longer reachable. Examples of what I see in the log during download are shown below.
Any help would be much appreciated.
package_bowtie_0_12_7 Error downloading from URL http://depot.galaxyproject.org/package/linux/x86_64/bowtie/ bowtie-0.12.7-linux-x86_64.tgz
package_samtools_0_1_19 Exception: Error downloading from URL https://depot.galaxyproject.org/software/samtools/samtools_ 0.1.19_src_all.tar.bz2* *
Regards James
J P Mullan
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-- Peter Briggs peter.briggs@manchester.ac.uk Bioinformatics Core Facility University of Manchester B.1083 Michael Smith Bldg Tel: (0161) 2751482 ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
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-- Peter Briggs peter.briggs@manchester.ac.uk Bioinformatics Core Facility University of Manchester B.1083 Michael Smith Bldg Tel: (0161) 2751482 ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
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