I am sorry, but I do not have a hgweb.config file in the install dir. My organisation: /home/galaxy/toolshed --> toolshed database for local repositories /home/galaxy/galaxy-dist --> main installation directory /home/galaxy/shed_tools --> dir for shed tools installed in galaxy Note: the page to create a new repo loads well. When I fill in the details and click 'save', the error described below appears. If more info is needed, please do not hesitate to ask. Joachim PS: for completeness, all files in my installation directory top :-p [galaxy@galaxy ~]$ ll -a galaxy-dist/ total 1716 drwxrwxr-x 19 galaxy galaxy 4096 Apr 2 15:57 . drwx------ 21 galaxy galaxy 4096 Apr 2 13:33 .. -rw-rw-r-- 1 galaxy galaxy 3994 Mar 27 17:04 buildbot_setup.sh -rw-rw-r-- 1 galaxy galaxy 2244 Mar 29 11:48 community.log -rw-rw-r-- 1 galaxy galaxy 116290 Apr 2 16:06 community_webapp.log -rw-rw-r-- 1 galaxy galaxy 4 Apr 2 15:57 community_webapp.pid -rw-rw-r-- 1 galaxy galaxy 2430 Apr 2 15:57 community_wsgi.ini -rw-rw-r-- 1 galaxy galaxy 2331 Mar 27 17:04 community_wsgi.ini.sample drwxrwxr-x 2 galaxy galaxy 4096 Mar 27 17:04 contrib -rwxrwxr-x 1 galaxy galaxy 60 Mar 27 17:04 create_db.sh drwxrwxr-x 2 galaxy galaxy 4096 Mar 27 17:04 cron drwxrwxr-x 9 nobody nobody 4096 Mar 29 11:43 database -rw-rw-r-- 1 galaxy galaxy 27442 Mar 27 17:04 datatypes_conf.xml -rw-rw-r-- 1 galaxy galaxy 27442 Mar 27 17:04 datatypes_conf.xml.sample -rw-rw-r-- 1 galaxy galaxy 1925 Mar 27 17:04 demo_sequencer_wsgi.ini.sample drwxrwxr-x 7 galaxy galaxy 4096 Mar 27 17:04 display_applications -rw-rw-r-- 1 galaxy galaxy 8965 Mar 27 17:04 dist-eggs.ini -rw-rw-r-- 1 galaxy galaxy 521 Mar 27 17:04 distributed_object_store_conf.xml.sample drwxrwxr-x 26 galaxy galaxy 4096 Mar 29 10:54 eggs -rw-rw-r-- 1 galaxy galaxy 1687 Mar 27 17:04 eggs.ini drwxrwxr-x 2 galaxy galaxy 4096 Mar 27 17:04 external_service_types -rw-rw-r-- 1 galaxy galaxy 234 Mar 27 17:04 external_service_types_conf.xml -rw-rw-r-- 1 galaxy galaxy 234 Mar 27 17:04 external_service_types_conf.xml.sample -rwxrwxr-x 1 galaxy galaxy 146 Mar 27 17:04 extract_dataset_parts.sh drwxrwxr-x 3 galaxy galaxy 4096 Mar 27 17:04 .hg -rw-rw-r-- 1 galaxy galaxy 579 Mar 27 17:04 .hgignore drwxrwxr-x 6 galaxy galaxy 4096 Apr 2 10:33 import -rw-r--r-- 1 galaxy galaxy 17751 Apr 2 13:42 integrated_tool_panel.xml drwxrwxr-x 4 galaxy galaxy 4096 Mar 27 17:04 lib -rw-rw-r-- 1 galaxy galaxy 1254 Mar 27 17:04 LICENSE.txt drwxrwxr-x 5 galaxy galaxy 4096 Mar 27 17:04 locale -rwxrwxr-x 1 galaxy galaxy 238 Mar 27 17:04 manage_db.sh -rw-rw-r-- 1 galaxy galaxy 63 Mar 27 17:04 manage_tools.sh -rw-rw-r-- 1 galaxy galaxy 68 Mar 27 17:04 migrated_tools_conf.xml -rw-rw-r-- 1 galaxy galaxy 68 Mar 27 17:04 migrated_tools_conf.xml.sample -rw-rw-r-- 1 galaxy galaxy 1088563 Apr 2 15:47 paster.log -rw-rw-r-- 1 galaxy galaxy 4 Apr 2 13:42 paster.pid -rw-rw-r-- 1 galaxy galaxy 820 Mar 27 17:04 README.txt -rw-rw-r-- 1 galaxy galaxy 2035 Mar 27 17:04 reports_wsgi.ini -rw-rw-r-- 1 galaxy galaxy 2035 Mar 27 17:04 reports_wsgi.ini.sample -rw-rw-r-- 1 galaxy galaxy 2244 Mar 28 09:41 run_community.log -rwxrwxr-x 1 galaxy galaxy 146 Mar 27 17:04 run_community.sh -rw-rw-r-- 1 galaxy galaxy 160 Mar 27 17:04 run_demo_sequencer.sh -rwxrwxr-x 1 galaxy galaxy 1913 Mar 27 17:04 run_functional_tests.sh -rw-rw-r-- 1 galaxy galaxy 153 Mar 27 17:04 run_galaxy_listener.sh -rw-rw-r-- 1 galaxy galaxy 140 Mar 27 17:04 run_reports.sh -rwxrwxr-x 1 galaxy galaxy 1437 Mar 27 17:04 run.sh -rwxrwxr-x 1 galaxy galaxy 349 Mar 27 17:04 run_unit_tests.sh drwxrwxr-x 15 galaxy galaxy 4096 Mar 27 17:05 scripts -rwxrwxr-x 1 galaxy galaxy 63 Mar 27 17:04 set_metadata.sh -rw-rw-r-- 1 galaxy galaxy 101 Mar 27 17:04 setup_rabbitmq.sh -rw-rw-r-- 1 galaxy galaxy 79 Apr 2 12:56 shed_tool_conf.xml -rw-rw-r-- 1 galaxy galaxy 69 Mar 27 17:04 shed_tool_conf.xml.sample drwxrwxr-x 16 galaxy galaxy 4096 Mar 27 17:04 static drwxrwxr-x 19 galaxy galaxy 4096 Mar 27 17:04 templates drwxrwxr-x 5 galaxy galaxy 4096 Mar 27 17:04 test drwxrwxr-x 18 galaxy galaxy 61440 Mar 27 17:04 test-data -rw-rw-r-- 1 galaxy galaxy 27345 Mar 27 17:04 tool_conf.xml -rw-rw-r-- 1 galaxy galaxy 21517 Mar 27 17:04 tool_conf.xml.main -rw-rw-r-- 1 galaxy galaxy 27345 Mar 27 17:04 tool_conf.xml.sample drwxrwxr-x 3 galaxy galaxy 4096 Mar 27 17:04 tool-data -rw-rw-r-- 1 galaxy galaxy 5226 Mar 27 17:04 tool_data_table_conf.xml -rw-rw-r-- 1 galaxy galaxy 3185 Mar 27 17:04 tool_data_table_conf.xml.oldlocstyle -rw-rw-r-- 1 galaxy galaxy 5226 Mar 27 17:04 tool_data_table_conf.xml.sample -rw-rw-r-- 1 galaxy galaxy 2618 Mar 27 17:04 tool_list.py drwxrwxr-x 45 galaxy galaxy 4096 Mar 27 17:04 tools -rw-rw-r-- 1 galaxy galaxy 291 Apr 2 12:57 tool_sheds_conf.xml -rw-rw-r-- 1 galaxy galaxy 219 Mar 27 17:04 tool_sheds_conf.xml.sample -rw-rw-r-- 1 galaxy galaxy 27983 Apr 2 15:55 universe_wsgi.ini -rw-rw-r-- 1 galaxy galaxy 27949 Mar 27 17:04 universe_wsgi.ini.sample On 04/02/2012 04:23 PM, Greg Von Kuster wrote:
It should be in your Galaxy installation directory, and your on-disk repositories will be in a directory under the setting you've defined for the "file_path" configuration in your community_wsgi.ini file.
On Apr 2, 2012, at 10:17 AM, Joachim Jacob wrote:
Hi Greg,
If it is most likely a configuration error, I will check my settings, and let you know my progress.
But one note: I do not have a hgweb.config file. Where is it supposed to reside? I cannot find this info on the toolshed wiki.
Joachim
On 04/02/2012 03:30 PM, Greg Von Kuster wrote:
Hi Joachim,
I've not seen this in any of my tool shed development environments, nor using the test or main Galaxy tool sheds, so it is unlikely that this is a bug. It looks more likely to be a configuration problem in your local tool shed environment. Do the repositories defined in your hgweb.config match those you have on disk?
Greg Von Kuster
On Apr 2, 2012, at 8:38 AM, Joachim Jacob wrote:
Hi all,
On a local Toolshed freshly installed, I got these errors when browsing my repository.
Perhaps a bug?
Cheers, Joachim
Server Error
URL: http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories>> Module paste.exceptions.errormiddleware:*143* in |__call__| |>> <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories# <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>app_iter *=* self*.*application*(*environ*,* start_response*)*| Module paste.debug.prints:*98* in |__call__| |>> <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories# <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>environ*,* self*.*app*)*| Module paste.wsgilib:*539* in |intercept_output| |>> <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories# <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>app_iter *=* application*(*environ*,* replacement_start_response*)*| Module paste.recursive:*80* in |__call__| |>> <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories# <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>*return* self*.*application*(*environ*,* start_response*)*| Module paste.httpexceptions:*632* in |__call__| |>> <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories# <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>*return* self*.*application*(*environ*,* start_response*)*| Module galaxy.web.framework.base:*160* in |__call__| |>> <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories# <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>body *=* method*(* trans*,* ****kwargs *)*| Module galaxy.webapps.community.controllers.repository:*985* in |browse_repositories| |>> <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories# <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>*return* self*.*repository_list_grid*(* trans*,* ****kwd *)*| Module galaxy.web.framework.helpers.grids:*277* in |__call__| |>> <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories# <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>kwargs*=*kwargs *)*| Module galaxy.web.framework:*722* in |fill_template| |>> <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories# <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>*return* self*.*fill_template_mako*(* filename*,* ****kwargs *)*| Module galaxy.web.framework:*733* in |fill_template_mako| |>> <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories# <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>*return* template*.*render*(* ****data *)*| Module mako.template:*296* in |render| |>> <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories# <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>*return* runtime*.*_render*(*self*,* self*.*callable_*,* args*,* data*)*| Module mako.runtime:*660* in |_render| |>> <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories# <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>****_kwargs_for_callable*(*callable_*,* data*)**)*| Module mako.runtime:*692* in |_render_context| |>> <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories# <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>_exec_template*(*inherit*,* lclcontext*,* args*=*args*,* kwargs*=*kwargs*)*| Module mako.runtime:*718* in |_exec_template| |>> <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories# <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>callable_*(*context*,* ***args*,* ****kwargs*)*| Module _base_mako:*42* in |render_body| |>> <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories# <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>__M_writer*(*unicode*(*next*.*body*(**)**)**)*| Module _grid_base_mako:*119* in |render_body| |>> <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories# <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>__M_writer*(*unicode*(*self*.*grid_body*(* grid *)**)**)*| Module _grid_base_mako:*790* in |render_grid_body| |>> <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories# <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>__M_writer*(*unicode*(*self*.*make_grid*(* grid *)**)**)*| Module _grid_base_mako:*819* in |render_make_grid| |>> <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories# <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>__M_writer*(*unicode*(*self*.*render_grid_table*(* grid*,* show_item_checkboxes *)**)**)*| Module _grid_base_mako:*768* in |render_render_grid_table| |>> <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories# <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>__M_writer*(*unicode*(*render_grid_table_body_contents*(* grid*,* show_item_checkboxes *)**)**)*| Module _grid_base_mako:*664* in |render_grid_table_body_contents| |>> <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories# <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>*return* render_render_grid_table_body_contents*(*context*,*grid*,*show_item_checkboxes*)*| Module _grid_base_mako:*322* in |render_render_grid_table_body_contents| |>> <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories# <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>value *=* column*.*get_value*(* trans*,* grid*,* item *)*| Module galaxy.webapps.community.controllers.repository:*84* in |get_value| |>> <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories# <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>select_field *=* build_changeset_revision_select_field*(* trans*,* repository *)*| Module galaxy.webapps.community.controllers.common:*992* in |build_changeset_revision_select_field| |>> <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories# <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>repo *=* hg*.*repository*(* get_configured_ui*(**)**,* repository*.*repo_path *)*| Module galaxy.webapps.community.controllers.common:*757* in |get_configured_ui| |>> <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories# <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>_ui*.*setconfig*(* 'ui'*,* 'quiet'*,* True *)*| Module mercurial.ui:*113* in |setconfig| |>> <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories# <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>self*.*fixconfig*(**)*| Module mercurial.ui:*100* in |fixconfig| |>> <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories# <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>self*.*quiet *=* *not* self*.*debugflag *and* self*.*configbool*(*'ui'*,* 'quiet'*)*| Module mercurial.ui:*134* in |configbool| |>> <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories# <http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>*if* v*.*lower*(**)* *not* *in* _booleans*:*| *AttributeError: 'bool' object has no attribute 'lower' *
-- Joachim Jacob, PhD
Rijvisschestraat 120, 9052 Zwijnaarde Tel: +32 9 244.66.34 Bioinformatics Training and Services (BITS) http://www.bits.vib.be @bitsatvib
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