Hi, We've just installed the latest galaxy-dist: hg clone https://bitbucket.org/galaxy/galaxy-dist/ cd galaxy-dist hg -v update stable The server runs: CentOS release 6.5, python 2.6.8, and mysql-5.1.71-1.el6.x86_64 "sh run.sh" has failed: ...... migrate.versioning.repository DEBUG 2013-12-10 09:35:51,145 Repository lib/galaxy/model/migrate loaded successfully migrate.versioning.repository DEBUG 2013-12-10 09:35:51,145 Config: {'db_settings': {'__name__': 'db_settings', 'required_dbs': '[]', 'version_table': 'migrate_version', 'repository_id': 'Galaxy'}} galaxy.model.migrate.check DEBUG 2013-12-10 09:35:51,152 MySQL_python egg successfully loaded for mysql dialect galaxy.model.migrate.check INFO 2013-12-10 09:35:51,309 No database, initializing Traceback (most recent call last): File "/wwwdata/galaxy/lib/galaxy/webapps/galaxy/buildapp.py", line 39, in app_factory app = UniverseApplication( global_conf = global_conf, **kwargs ) File "/wwwdata/galaxy/lib/galaxy/app.py", line 54, in __init__ create_or_verify_database( db_url, kwargs.get( 'global_conf', {} ).get( '__file__', None ), self.config.database_engine_options, app=self ) File "/wwwdata/galaxy/lib/galaxy/model/migrate/check.py", line 64, in create_or_verify_database db_schema = schema.ControlledSchema( engine, migrate_repository ) File "/wwwdata/galaxy/eggs/sqlalchemy_migrate-0.7.2-py2.6.egg/migrate/versioning/schema.py", line 32, in __init__ self.load() File "/wwwdata/galaxy/eggs/sqlalchemy_migrate-0.7.2-py2.6.egg/migrate/versioning/schema.py", line 44, in load self.table = Table(tname, self.meta, autoload=True) File "/wwwdata/galaxy/eggs/SQLAlchemy-0.7.9-py2.6-linux-x86_64-ucs4.egg/sqlalchemy/schema.py", line 318, in __new__ table._init(name, metadata, *args, **kw) File "/wwwdata/galaxy/eggs/SQLAlchemy-0.7.9-py2.6-linux-x86_64-ucs4.egg/sqlalchemy/schema.py", line 381, in _init self._autoload(metadata, autoload_with, include_columns) File "/wwwdata/galaxy/eggs/SQLAlchemy-0.7.9-py2.6-linux-x86_64-ucs4.egg/sqlalchemy/schema.py", line 408, in _autoload self, include_columns, exclude_columns File "/wwwdata/galaxy/eggs/SQLAlchemy-0.7.9-py2.6-linux-x86_64-ucs4.egg/sqlalchemy/engine/base.py", line 2425, in run_callable return conn.run_callable(callable_, *args, **kwargs) File "/wwwdata/galaxy/eggs/SQLAlchemy-0.7.9-py2.6-linux-x86_64-ucs4.egg/sqlalchemy/engine/base.py", line 1968, in run_callable return callable_(self, *args, **kwargs) File "/wwwdata/galaxy/eggs/SQLAlchemy-0.7.9-py2.6-linux-x86_64-ucs4.egg/sqlalchemy/engine/default.py", line 260, in reflecttable return insp.reflecttable(table, include_columns, exclude_columns) File "/wwwdata/galaxy/eggs/SQLAlchemy-0.7.9-py2.6-linux-x86_64-ucs4.egg/sqlalchemy/engine/reflection.py", line 350, in reflecttable tbl_opts = self.get_table_options(table_name, schema, **table.kwargs) File "/wwwdata/galaxy/eggs/SQLAlchemy-0.7.9-py2.6-linux-x86_64-ucs4.egg/sqlalchemy/engine/reflection.py", line 178, in get_table_options **kw) File "<string>", line 1, in <lambda> File "/wwwdata/galaxy/eggs/SQLAlchemy-0.7.9-py2.6-linux-x86_64-ucs4.egg/sqlalchemy/engine/reflection.py", line 47, in cache ret = fn(self, con, *args, **kw) File "/wwwdata/galaxy/eggs/SQLAlchemy-0.7.9-py2.6-linux-x86_64-ucs4.egg/sqlalchemy/dialects/mysql/base.py", line 2064, in get_table_options parsed_state = self._parsed_state_or_create(connection, table_name, schema, **kw) File "/wwwdata/galaxy/eggs/SQLAlchemy-0.7.9-py2.6-linux-x86_64-ucs4.egg/sqlalchemy/dialects/mysql/base.py", line 2163, in _parsed_state_or_create info_cache=kw.get('info_cache', None) File "<string>", line 1, in <lambda> File "/wwwdata/galaxy/eggs/SQLAlchemy-0.7.9-py2.6-linux-x86_64-ucs4.egg/sqlalchemy/engine/reflection.py", line 47, in cache ret = fn(self, con, *args, **kw) File "/wwwdata/galaxy/eggs/SQLAlchemy-0.7.9-py2.6-linux-x86_64-ucs4.egg/sqlalchemy/dialects/mysql/base.py", line 2188, in _setup_parser full_name=full_name) File "/wwwdata/galaxy/eggs/SQLAlchemy-0.7.9-py2.6-linux-x86_64-ucs4.egg/sqlalchemy/dialects/mysql/base.py", line 2275, in _show_create_table raise exc.NoSuchTableError(full_name) DatabaseNotControlledError: `migrate_version` Your help is much appreciated. Zong-Pei Han