On Aug 8, 2013, at 9:48 AM, Auerbach, Kenneth R. wrote:
Hello,
Could anyone tell me if there are detailed instructions anywhere for setting up Galaxy on a Linux cluster using an LSF scheduler?
Thank you.
Hi, There aren't any instructions specific to LSF because we simply interface with it using the DRMAA runner, like we do for PBS Pro and Grid Engine. You do need to install FedStage DRMAA for LSF since Platform doesn't (didn't?) ship a DRMAA library with LSF: http://sourceforge.net/projects/lsf-drmaa/
From there, you can follow the instructions in the cluster/job documentation:
http://wiki.galaxyproject.org/Admin/Config/Performance/Cluster http://wiki.galaxyproject.org/Admin/Config/Jobs General documentation on setting up a "production" Galaxy system can be found at: http://usegalaxy.org/production --nate
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