Hi all,
I'm getting the following exception in a failing unit test: https://travis-ci.org/peterjc/pico_galaxy/builds/39398677
Testing this tool (where two of the three near identical tests passed): https://github.com/peterjc/pico_galaxy/blob/dd03346710e6a46cb6ec9dda1eed23d5...
``` Traceback (most recent call last): File "/home/travis/build/peterjc/pico_galaxy/galaxy-central-master/test/functional/test_toolbox.py", line 116, in test_tool self.do_it( td ) File "/home/travis/build/peterjc/pico_galaxy/galaxy-central-master/test/functional/test_toolbox.py", line 35, in do_it self._verify_outputs( testdef, test_history, jobs, shed_tool_id, data_list, galaxy_interactor ) File "/home/travis/build/peterjc/pico_galaxy/galaxy-central-master/test/functional/test_toolbox.py", line 75, in _verify_outputs galaxy_interactor.verify_output( history, jobs, output_data, output_testdef=output_testdef, shed_tool_id=shed_tool_id, maxseconds=maxseconds ) File "/home/travis/build/peterjc/pico_galaxy/galaxy-central-master/test/base/interactor.py", line 89, in verify_output self._verify_metadata( history_id, hid, attributes ) File "/home/travis/build/peterjc/pico_galaxy/galaxy-central-master/test/base/interactor.py", line 102, in _verify_metadata dataset = self._get( "histories/%s/contents/%s" % ( history_id, hid ) ).json() File "/home/travis/build/peterjc/pico_galaxy/galaxy-central-master/eggs/requests-2.2.1-py2.7.egg/requests/models.py", line 740, in json return json.loads(self.content.decode(encoding), **kwargs) File "/usr/lib/python2.7/dist-packages/simplejson/__init__.py", line 413, in loads return _default_decoder.decode(s) File "/usr/lib/python2.7/dist-packages/simplejson/decoder.py", line 402, in decode obj, end = self.raw_decode(s, idx=_w(s, 0).end()) File "/usr/lib/python2.7/dist-packages/simplejson/decoder.py", line 418, in raw_decode obj, end = self.scan_once(s, idx) JSONDecodeError: Unpaired high surrogate: line 1 column 785 (char 785) ```
Probably relevant: - https://github.com/simplejson/simplejson/issues/62 - http://bugs.python.org/issue11489
Any thoughts? What does Galaxy write to these job-associated JSON metadata files?
Thanks,
Peter