Do you have a ~/.planemo.yml file? I think probably yes based on the previous exception. Can you replace passwords and keys with XXXX and send me a copy of that as well as the command-line that produced the above output? -John On Mon, Jun 29, 2015 at 12:05 PM, Alexander Vowinkel <vowinkel.alexander@gmail.com> wrote:
Thanks,
now I get the following directly after the diff output:
Could not update stacks object of type 'NoneType' has no len()
/usr/local/lib/python2.7/dist-packages/requests/packages/urllib3/connectionpool.py:768: InsecureRequestWarning: Unverified HTTPS request is being made. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.org/en/latest/security.html InsecureRequestWarning)
/usr/local/lib/python2.7/dist-packages/requests/packages/urllib3/connectionpool.py:768: InsecureRequestWarning: Unverified HTTPS request is being made. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.org/en/latest/security.html InsecureRequestWarning) Repository metadata updated. Failed to update a repository.
What does that mean?
Best, Alexander
2015-06-29 10:41 GMT-05:00 John Chilton <jmchilton@gmail.com>:
Thanks for the bug report. I have fixed this problem here
(https://github.com/galaxyproject/planemo/commit/a32d082eeee0a6b856d8d15c9619...) and released a new version of planemo (0.13.0) with fix. Hopefully you will get a better error message after the upgrade if there is still a configuration issue.
-John
On Sat, Jun 27, 2015 at 6:32 AM, Björn Grüning <bjoern.gruening@gmail.com> wrote:
Hi Alexander,
I have opend an issue: https://github.com/galaxyproject/planemo/issues/240
Thanks for reporting, Bjoern
Am 27.06.2015 um 07:11 schrieb Alexander Vowinkel:
Hi,
I'm running:
planemo shed_update --check_diff --shed_target toolshed
and get a python error message (see below).
shed_diff and shed_lint are working fine. planemo, version 0.12.2
Best, Alexander
Traceback (most recent call last):
File "/usr/local/bin/planemo", line 11, in <module> sys.exit(planemo()) File "/usr/local/lib/python2.7/dist-packages/click/core.py", line 664, in __call__ return self.main(*args, **kwargs) File "/usr/local/lib/python2.7/dist-packages/click/core.py", line 644, in main rv = self.invoke(ctx) File "/usr/local/lib/python2.7/dist-packages/click/core.py", line 991, in invoke return _process_result(sub_ctx.command.invoke(sub_ctx)) File "/usr/local/lib/python2.7/dist-packages/click/core.py", line 837, in invoke return ctx.invoke(self.callback, **ctx.params) File "/usr/local/lib/python2.7/dist-packages/click/core.py", line 464, in invoke return callback(*args, **kwargs) File "/usr/local/lib/python2.7/dist-packages/click/decorators.py", line 64, in new_func return ctx.invoke(f, obj, *args[1:], **kwargs) File "/usr/local/lib/python2.7/dist-packages/click/core.py", line 464, in invoke return callback(*args, **kwargs) File
"/usr/local/lib/python2.7/dist-packages/planemo/commands/cmd_shed_update.py", line 52, in cli tsi = shed.tool_shed_client(ctx, **kwds) File "/usr/local/lib/python2.7/dist-packages/planemo/shed/__init__.py", line 331, in tool_shed_client key = prop("key") File "/usr/local/lib/python2.7/dist-packages/planemo/shed/__init__.py", line 323, in prop return kwds.get("shed_%s" % key, None) or shed_config.get(key, None) AttributeError: 'NoneType' object has no attribute 'get'
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