Hi Jeremy,

 

a)      Yes, were are using a custom build and the build shows the correct number of contigs (28.592).

b)      There are no errors in the console.

 

Thanks, Thomas

 

Von: Jeremy Goecks [mailto:jeremy.goecks@emory.edu] 
Gesendet: Dienstag, 22. Oktober 2013 15:55
An: Berner, Thomas
Cc: galaxy-dev@lists.bx.psu.edu
Betreff: Re: [galaxy-dev] trackster: missing graphs for large number of contigs

 

A couple questions:

 

(a) are you using a custom build? If so, does the build show the correct number of chromosomes?

(b) do you see any errors in the JavaScript console when trying to view the BAM file?

 

Thanks,

J.

 

On Oct 21, 2013, at 11:05 AM, "Berner, Thomas" <thomas.berner@jki.bund.de> wrote:

Hey guys,

 

we want to use trackster in our local galaxy instance (rev. 10392:1ae95b3aa98d release_2013.08.12) and followed the instructions at http://wiki.g2.bx.psu.edu/Learn/Visualization  .

 

We tested it with a custom Build of 96 sequences in a fasta file, where all bams were mapped against before,  everything worked fine.

But now we want to do the same for a much larger file (about 29.000 contigs) and no graph is displayed at all, no matter which contig is used.

 

No error appears, only the graphs are missing.

 

Any ideas what this could be? We would be grateful for any advice.

 

Thanks

 

Thomas

---

 

Thomas Berner

 

Julius Kühn-Institut (JKI)

- Federal Research Centre for Cultivated Plants - Erwin Baur-Straße 27

06484 Quedlinburg

- Germany -

 

Phone: ++49  ( 0 ) 3946  47  562

EMail: thomas.berner@jki.bund.de

 

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