Hi Peter,
Thanks! The fix worked with the new Illumina format.
Your help is much appreciated :)

Cheers,
Liisa

Liisa Koski
Bioinformatics Programmer




From: Peter Cock <p.j.a.cock@googlemail.com>
To: Liisa Koski <liisa.koski@dnalandmarks.ca>
Cc: galaxy-dev <galaxy-dev@bx.psu.edu>
Date: 2011-12-12 03:47
Subject: Re: [galaxy-dev] Divide FASTQ file into paired and unpaired reads (version 0.0.4) - naming suffix not recognized






On Friday, December 9, 2011, Peter Cock <p.j.a.cock@googlemail.com> wrote:
> On Fri, Dec 9, 2011 at 5:05 PM, Liisa Koski <liisa.koski@dnalandmarks.ca> wrote:
>>
>> Thanks Peter! That would be great! Let me know when you want me to test it :)
>> Cheers,
>> Liisa
>
> The revised code is here on bitbucket (on the branch "tools"), you'll
> need fastq_paired_unpaired.py and fastq_paired_unpaired.xml v0.0.5:

Try this (looks like I had the wrong link on Friday), sorry:

https://bitbucket.org/peterjc/galaxy-central/src/a25f7920a1e5/tools/fastq

Peter