I don’t know anything about docker - yet. best, ido
On 29 Jun 2016, at 13:02, Philipp Rathert <philipp.rathert@ibc.uni-stuttgart.de> wrote:
Hi Ido,
I get no error message, but the command does not change anything. Rights are still assigned to host user and not to postgresql.
Could it be that, since galaxy and other program were running in a docker container, none of these users are known in the actual host environment?
Cheers,
Philipp
-----Original Message----- From: Tamir,Ido [mailto:Ido.Tamir@vbcf.ac.at] Sent: Wednesday, June 29, 2016 12:50 PM To: Rathert, Philipp, Dr. <philipp.rathert@ibc.uni-stuttgart.de> Cc: galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] Docker for Mac
On 29 Jun 2016, at 10:23, Rathert, Philipp, Dr. <philipp.rathert@ibc.uni-stuttgart.de> wrote:
And I have the additional problem that I have to assign ownership rights to the folders in /export and I get the following error:
chown -R postgres:postgres /postgresql chown: postgres: illegal group name
I think on OSX the user/group is _postgres and it should be
chown -R _postgres:_postgres /export
On 29 Jun 2016, at 10:23, Rathert, Philipp, Dr. <philipp.rathert@ibc.uni-stuttgart.de> wrote:
Dear all I was wondering if anybody has experience running a galaxy production server using docker for mac. I know it's beta testing at the moment but since the Virtual machine environment gave us such a hard time preserving and managing user data etc. I thought I try it anyway...
However, it seems to be not as easy as expected.
after installation of docker I pull the new docker galaxy image with docker pull quay.io/bgruening/galaxy:16.04 When I start a test container with net=host docker run -it --net=host quay.io/bgruening/galaxy:16.04) I am not able to connect to the galaxy web app and get this error:
Starting ProFTP proftpd: ERROR (abnormal termination)
and
==> /home/galaxy/logs/slurmd.log <== [2016-06-29T08:13:41.440] error: Unable to resolve "moby": Unknown host [2016-06-29T08:13:41.440] error: Unable to establish control machine address
I then tried to use Kinematik and at least I get the web app running. However, I didn't find the option to change the network settings to net=host
And I have the additional problem that I have to assign ownership rights to the folders in /export and I get the following error:
chown -R postgres:postgres /postgresql chown: postgres: illegal group name
I know these are many issues, but maybe one of you has experience with this and could provide some help.
Thanks a lot,
Philipp
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