| Number: | 198 |
| Name: | Bismark Pretty Report on data 190, data 189, and others: Download pretty html report |
| Created: | Thu 07 Mar 2019 03:24:40 PM (UTC) |
| Filesize: | 2.7 MB |
| Dbkey: | ? |
| Format: | html |
| Galaxy Tool ID: | toolshed.g2.bx.psu.edu/repos/bgruening/bismark/bismark_pretty_report/0.20.0 |
| Galaxy Tool Version: | 0.20.0 |
| Tool Version: | |
| Tool Standard Output: | stdout |
| Tool Standard Error: | stderr |
| Tool Exit Code: | 0 |
| History Content API ID: | 971c2f882eb14ac3 (41433) |
| Job API ID: | 58816697357e736f (22051) |
| History API ID: | 5fccce9c1b3793da (807) |
| UUID: | 45bedd12-6ce5-4d63-a1e2-e05883b0c356 |
| Full Path: | /opt/galaxy/galaxy/database/files/038/dataset_38737.dat |
| Input Parameter | Value | Note for rerun |
|---|---|---|
| Submit a Bismark mapping report | 191: Bismark Meth. Extractor on data 60 and data 133: Genome-wide methylation report. | |
| additional_reports | ||
| Submit the corresponding Bismark deduplication report | 197: Bismark Deduplicate on data 133: deduplication report | |
| Submit the corresponding Bismark splitting report | 189: Bismark Meth. Extractor on data 60 and data 133: Splitting Report | |
| Submit the corresponding Bismark M-bias report | 190: Bismark Meth. Extractor on data 60 and data 133: Mbias Report | |
| Submit the corresponding Bismark nucleotide report | |
|
| Create a separate logfile, otherwise logs are added to the dataset info. | False |
python '/opt/galaxy/shed_tools/toolshed.g2.bx.psu.edu/repos/bgruening/bismark/7bffcb6fc81d/bismark/bismark2report_wrapper.py' --alignment_report '/opt/galaxy/galaxy/database/files/038/dataset_38715.dat' --dedup_report '/opt/galaxy/galaxy/database/files/038/dataset_38736.dat' --splitting_report '/opt/galaxy/galaxy/database/files/038/dataset_38713.dat' --mbias_report '/opt/galaxy/galaxy/database/files/038/dataset_38714.dat' --output_html_report '/opt/galaxy/galaxy/database/files/038/dataset_38737.dat'
| Cores Allocated | 8 |
| Job End Time | 2019-03-07 16:49:58 |
| Job Runtime (Wall Clock) | 25 minutes |
| Job Start Time | 2019-03-07 16:24:43 |
| Memory Allocated (MB) | 510000 |
| Dependency | Dependency Type | Version |
|---|---|---|
| bismark | conda | 0.20.0 |
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