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Alignment Stats

{{sequences_analysed_in_total}} {{total_sequences_alignments}} {{unique_seqs_text}} {{unique_seqs}} {{no_alignments_text}} {{no_alignments}} {{multiple_alignments_text}} {{multiple_alignments}} Genomic sequence context not extractable (edges of chromosomes) {{no_genomic}}

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Cytosine Methylation

{{meth_unknown}} {{unmeth_unknown}} {{perc_unknown}} Total C's analysed {{total_C_count}} Methylated C's in CpG context {{meth_CpG}} Methylated C's in CHG context {{meth_CHG}} Methylated C's in CHH context {{meth_CHH}} Unmethylated C's in CpG context {{unmeth_CpG}} Unmethylated C's in CHG context {{unmeth_CHG}} Unmethylated C's in CHH context {{unmeth_CHH}} Percentage methylation (CpG context) {{perc_CpG}}% Percentage methylation (CHG context) {{perc_CHG}}% Percentage methylation (CHH context) {{perc_CHH}}%

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Alignment to Individual Bisulfite Strands

OT {{number_OT}} original top strand CTOT {{number_CTOT}} complementary to original top strand CTOB {{number_CTOB}} complementary to original bottom strand OB {{number_OB}} original bottom strand

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Deduplication

Alignments analysed 2527135 Unique alignments 2520884 Duplicates removed 6251 Duplicated alignments were found at 4922 different positions

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Cytosine Methylation after Extraction

Total C's analysed 133583296 Methylated C's in CpG context 4020513 Methylated C's in CHG context 573872 Methylated C's in CHH context 2506703 Unmethylated C's in CpG context 2156601 Unmethylated C's in CHG context 27955607 Unmethylated C's in CHH context 96370000 Percentage methylation (CpG context) 65.1% Percentage methylation (CHG context) 2.0% Percentage methylation (CHH context) 2.5%

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M-Bias Plot

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