I am still working on the patch to submit jobs as the actual user under SGE . I have it working for the default case but it fails for the case of set_metadata_externally = TRUE.  Can someone point me to where the metadata files are created so that I can change the permissions for those files?

 

Also, I have to addusers to the galaxy group in order for this to work because the galaxy_*.sh scripts are created as executable only by members of the galaxy group. I want to change this so that all users can execute these scripts. Any help on where in the code these scripts are created?

 

Upon completion I will create a galaxy central fork and upload my changes to it.

 

Thanks,

 

Ilya

 

 

Ilya Chorny Ph.D.

Bioinformatics – Intern

ichorny@illumina.com

858-202-4582