Hi All,

 

I have encountered this strange problem while submitting a job to an sge queue. I have used the unified method wherein the galaxy setup is made available on NFS. I have mounted the galaxy directory on the execution host.

 

As I submit a job through the web ui I could trace that the job does get submitted to the queue. But however it fails with an error as below:

 

galaxy.jobs.runners.sge DEBUG 2009-04-14 08:36:09,252 (15/15) state change: job finished, but failed

galaxy.jobs ERROR 2009-04-14 08:36:09,493 Unable to cleanup job 15 Traceback (most recent call last):

  File "/usr/galaxy/galaxy-6c555b0460f1/lib/galaxy/jobs/__init__.py", line 523, in cleanup   shutil.rmtree( self.working_directory )

  File "/usr/local/lib/python2.5/shutil.py", line 167, in rmtree onerror(os.listdir, path, sys.exc_info())

  File "/usr/local/lib/python2.5/shutil.py", line 165, in rmtree names = os.listdir(path)

OSError: [Errno 2] No such file or directory: './database/job_working_directory/15'

 

Where could error be. Kindly let me know if anybody has faced error before.

 

Thanks a ton

Akash