hi all:

 

galaxy.jobs.runners.cli_job.torque WARNING 2014-03-07 11:23:33,764 No valid qstat XML return from `qstat -x`, got the following:

galaxy.jobs.runners ERROR 2014-03-07 11:23:33,765 Unhandled exception checking active jobs

Traceback (most recent call last):

  File "/share/home/ldapuser/main/lib/galaxy/jobs/runners/__init__.py", line 339, in monitor

    self.check_watched_items()

  File "/share/home/ldapuser/main/lib/galaxy/jobs/runners/cli.py", line 150, in check_watched_items

    job_states = self.__get_job_states()

  File "/share/home/ldapuser/main/lib/galaxy/jobs/runners/cli.py", line 202, in __get_job_states

    job_states.update(job_interface.parse_status(cmd_out.stdout, job_ids))

TypeError: 'NoneType' object is not iterable

 
#qmgr -c "p q batch"
 
create queue batch
set queue batch queue_type = Execution
set queue batch enabled = True
set queue batch started = True
 
Finish the torque tasks ， throw exceptions in the log file。
ngsflow@hygenomics.com