On 29 Jun 2016, at 15:57, Philipp Rathert <philipp.rathert@ibc.uni-stuttgart.de> wrote:

Hi Hans-Rudolph,

This means you use 

Docker pull bgruening/galaxy-stable:latest to get the image?

 

I just noticed that the “latest” image is 6 weeks old and the other only 9 days…

 

Anyway, I will try if the problems occur with the old one as well. 

 

Did you ever tried to use Docker for mac in a production mode, if yes any idea how to allow acces from other computers in the network?

Cheers,

 

Philipp

 

From: Hans-Rudolf Hotz [mailto:hansrudolf.hotz@fmi.ch] 
Sent: Wednesday, June 29, 2016 3:50 PM
To: Rathert, Philipp, Dr. <philipp.rathert@ibc.uni-stuttgart.de>
Cc: galaxy-dev@lists.galaxyproject.org
Subject: Re: [galaxy-dev] Docker for Mac

 

Hi Philipp

 

I have successfully used "Docker for Mac (beta)” on 10.11.5, but I have always used the traditional location for the image to fetch from: https://index.docker.io/u/bgruening/galaxy-stable/   (i.e just following the excellent recipes on https://github.com/bgruening/docker-galaxy-stable )

 

and just by coincidence:  last night I tried 'quay.io/bgruening/galaxy:16.04' and it didn’t work, but I haven’t  investigated why….

 

Hans-Rudolf

 

 

On 29 Jun 2016, at 10:23, Rathert, Philipp, Dr. <philipp.rathert@ibc.uni-stuttgart.de> wrote:

 

Dear all I was wondering if anybody has experience running a galaxy production server using docker for mac. I know it's beta testing at the moment but since the Virtual machine environment gave us such a hard time preserving and managing user data etc. I thought I try it anyway...

However, it seems to be not as easy as expected.

 

after installation of docker I pull the new docker galaxy image with

docker pull quay.io/bgruening/galaxy:16.04



When I start a test container with net=host

docker run -it --net=host quay.io/bgruening/galaxy:16.04) 



I am not able to connect to the galaxy web app and get this  error:



Starting ProFTP

proftpd: ERROR (abnormal termination)



and 

==> /home/galaxy/logs/slurmd.log <==

[2016-06-29T08:13:41.440] error: Unable to resolve "moby": Unknown host

[2016-06-29T08:13:41.440] error: Unable to establish control machine address

I then tried to use Kinematik and at least I get the web app running. However, I didn't find the option to change the network settings to net=host

And I have the additional problem that I have to assign ownership rights to the folders in /export and I get the following error:



chown -R postgres:postgres /postgresql

chown: postgres: illegal group name

I know these are many issues, but maybe one of you has experience with this and could provide some help.

Thanks a lot,

Philipp

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