Samual, We do the same as Peter mentioned. We generate pdfs or you could generate a mixed datatype html file linking to seperate documents/images (like the fastQC tool). If you get the export to png working on a headless server without desktop/gui..please let me know. In our hands it only works on full desktop linux environments somehow. Alex -----Oorspronkelijk bericht----- Van: galaxy-dev-bounces@lists.bx.psu.edu [mailto:galaxy-dev-bounces@lists.bx.psu.edu] Namens Samuel Lampa Verzonden: zondag 16 december 2012 23:14 Aan: Peter Cock CC: galaxy-dev@lists.bx.psu.edu Onderwerp: Re: [galaxy-dev] Integrating generated graphics from cli tool? On 12/14/2012 07:40 PM, Peter Cock wrote:
On Fri, Dec 14, 2012 at 6:18 PM, Samuel Lampa <samuel.lampa@gmail.com> wrote:
There are existing tools which produce a PDF file as a Galaxy output, shown as its own 'green box' in the history. This works quite nicely if the browser shows the PDF in-line, but one one of my machines (not sure which browser off hand) it insists on downloading the PDF and opening it instead - which isn't quite as smooth an interface.
Thanks for the info! Seems like that could be one way of doing it. I would probably output png rather than pdf, and that might work better. Best // Samuel -- Developer at SNIC-UPPMAX www.uppmax.uu.se Developer at Dept of Pharm Biosciences www.farmbio.uu.se ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/