On Fri, Jan 13, 2012 at 10:53 AM, Nate Coraor <nate@bx.psu.edu> wrote:

On Jan 12, 2012, at 11:41 PM, Ryan Golhar wrote:

> Any ideas as to how to fix this? We are interested in using Galaxy to host all our NGS data. If indexing on the head node is going to happen, then this is going to be an extremely slow process.

Could you post the contents of /home/galaxy/galaxy-dist-9/database/pbs/62.sh ?

Although I have to admit this is really baffling. The presence of this line without an error:

galaxy.datatypes.metadata DEBUG 2012-01-11 10:22:40,162 Cleaning up external metadata files

Indicates that metadata was set externally and the relevant metadata files were present on disk.

--nate