Hi everybody,

I am getting troubles when I try running our galaxy instance as a daemon service in ubuntu, using the procedure provided by James Casbon and available in the /contrib galaxy directory (briefly, installing the galaxy.debian-init in the /etc/init.d directory)

Everything is OK, *except* that third party softwares that are installed in /bin of the galaxy home directory fail.

I suspect a problem of $PATH when the service is launched with the command :

start-stop-daemon --chuid $USER --group $GROUP --start --make-pidfile \

            --pidfile $PIDFILE --background --chdir $DIR --exec $PYTHON -- $OPTS;

in the James bash script.

However, R scripts for instance are run correctly.

Taking this observation into account, we added /home/galaxy/bin in the /etc/environment

unfortunately without success.

Any advices for fixing this irritating bug is welcome !

Chris

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