Dear all,
obviously I missed the already existing and much more sophisticated emboss ‘shuffleseq’ that is available via galaxy.
So please ignore my last email to avoid redundancy!
Best, Felix
On 20.05.09 13:25, "Felix Muerdter" <felix.muerdter@gmx.de> wrote:
Dear all,
I would like to share a little tool for galaxy that I wrote.
The tool takes fasta files as input, keeps the header of each sequence but shuffles the sequence itself in a random order. Therefore the output file is a fasta file with sequences of the same base composition and length, but shuffled.
It is a very simple idea but gives me the opportunity to statistically evaluate certain analysis for “real” libraries with the newly created “in silico” libraries.
I hope some of you guys find this tool useful, comments are more than welcome!
Best, Felix
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