In my local instance of Galaxy, I'm trying to download the BAM and BAI file from the tool SAM-to-BAM. I see the links for downloading the Dataset and bam_index. BTW - I'm running Safari on Mac OS X. When I download the Dataset, I get the BAM file. When I download the bam_index, it gets renamed to Galaxy13-[SAM-to-BAM_on...].bam_index.html The error is the extension, .bam_index.html. This should be .bam.bai. The BAM file gets saved correctly with .bam. I check the sam-to-bam XML wrapper but can't determine where this filename comes from or how to fix it. Has anyone else run into this? -- CONFIDENTIALITY NOTICE: This email communication may contain private, confidential, or legally privileged information intended for the sole use of the designated and/or duly authorized recipient(s). If you are not the intended recipient or have received this email in error, please notify the sender immediately by email and permanently delete all copies of this email including all attachments without reading them. If you are the intended recipient, secure the contents in a manner that conforms to all applicable state and/or federal requirements related to privacy and confidentiality of such information.