After some digging I just found an archived email from Dannon where it looks like the problem I reported is fixed. In an email from Jan 8th entitled “multiple file input not taken into account in workflows”, Dannon said it was fixed in: changeset 6368:52de9815a7c4. If this is correct, please disregard this email and except my apology for reporting a known issue. Dave On 1/30/12 2:20 PM, "Dave Walton" <dave.walton@jax.org> wrote: We just upgraded our Galaxy server last week to the one from change-set b258de1e6cea. We have several workflows that leverage the ability to select multiple input files, that in turn launches an instance of the workflow per input file. When I use these workflows, it now only runs a single instance of the workflow. Is this feature broken? Did we miss something in our upgrade? Is it by chance fixed in one of the releases that have come out over the last couple weeks? Thanks, Dave ________________________________ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/