Hi,
I used the SAM to FASTQ tool to divide78 lines of Illimina paired end sequences in SAM format to FASTQ format. The read 2 data set works fine, and I used the FASTQ masker and then FASTQ to FASTA  tools.

I went to repeat those steps with the the read 1 data set. It errors with:

Error executing tool: maximum recursion depth exceeded while calling a Python object.

Thinking maybe the format was corrupted, I ran FASTQ groomer.  Same result:

Error executing tool: maximum recursion depth exceeded while calling a Python object.

Thinking the SAM to FASTQ had a problem, I repeated it. Same result:

Error executing tool: maximum recursion depth exceeded while calling a Python object.

You get thepicture. Anything I try with this data gives the same error.


When I googled the error, the top results were all about large data sets, but this isn't a large set.

Any help greatly appreciated,
Ann

Thanks for your help.
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