Dear all,<div><br></div><div>I just installed Mira-Assembler via Galaxy tool sheds. As expected, it downloaded the wrappers into the &quot;shed-tools&quot; directory. Then I downloaded and installed Mira binaries on the system and add it to $PATH. Right now, mira can run successfully in the command line prompt. However when i run it in the Galaxy UI, i run into the below error:</div>
<div><pre style="line-height:10px;background-image:initial;background-color:rgb(255,255,255);border-top-style:dotted;border-right-style:dotted;border-bottom-style:dotted;border-left-style:dotted;border-top-color:black;border-right-color:black;border-bottom-color:black;border-left-color:black;border-top-width:1px;border-right-width:1px;border-bottom-width:1px;border-left-width:1px;overflow-x:auto;overflow-y:auto;padding-top:10px;padding-right:10px;padding-bottom:10px;padding-left:10px">
Return error code 1 from command:
mira --job=denovo,genome,accurate SANGER_SETTINGS -LR:lsd=1:mxti=0:ft=fastq -FN:fqi=/media/partition2_/galaxydb_data/000/dataset_290.dat SOLEXA_SETTINGS -LR:lsd=1:ft=fastq -FN:fqi=/media/partition2_/galaxydb_data/000/dataset_290.dat COMMON_SETTINGS -OUT:orf=1:orc=1:ora=1:orw=1:orm=0:org=0:ors=0 -OUT:rrot=1:rtd=1</pre>
<div><br></div><div>Anyone know why? Thanks in advance.</div></div><div><br></div><div>Tyler</div>