On Mon, May 9, 2011 at 3:30 PM, Nate Coraor
<nate@bx.psu.edu> wrote:
Matthew Conte wrote:
> Good afternoon,
>
> I'm having several problems with my local galaxy install which may or may
> not be related to one another.
>
> The first problem I'm having is with the "Display data in browser" feature.
> Some files type formats (fastqsanger, fasta) display fine. However, other
> file type formats (png, svg, txt) simply do not display at all. I have
> debugging turned on, but do not see any error within the browser or within
> the galaxy log or web server log after clicking the "Display data in
> browser" eyeball icon. It is simply a blank middle panel.
>
> The next problem I'm having has to do with downloading files. Firefox and
> Safari will download any file from a history, but will just create an empty
> file on the client. Again, neither log file show an error with a clue to
> the problem. Chrome will download some files, but other files give me an
> error and won't download:
>
> *This webpage is not available*
> *
> *
> *error 100 (net::ERR_CONNECTION_CLOSED): The server unexpectedly closed the
> connection.*
>
> In this case, I don't see anything in the log files either.
Hi Matt,
Are you using the sendfile/x-accel-redirect configurations of
Apache/nginx? Are all of these issues the same if you connect directly
to Galaxy's built-in webserver instead of through a proxy server?
Yep, I'm using mod_xsendfile-0.12 for apache and x-accel-redirect for nginx, but both webservers are showing the same problems. If I use Galaxy's built-in webserver, I don't have the above problems, so the problem is probably related to the proxy server. I just can't seem to pinpoint the problem.
>
>
> Finally, I'm also having a problem logging in from the main welcome page.
> It seems to authenticate fine (I get an error when I put in the wrong
> password and don't when I put in the correct password), but it doesn't
> actually log me in and just takes me back to the main welcome page.
>
> For this problem, I do get an error in the galaxy log:
>
> *Exception happened during processing of request
> from---------------------------------------- *
> * self.wfile.flush()*
> * File "/raid/galaxy_user/lib/python2.6/socket.py", line 297, in flush*
> * self._sock.sendall(buffer(data, write_offset, buffer_size))*
> *error: [Errno 32] Broken pipe*
I see this occasionally on python 2.6, and it's usually just a harmless
intentional interrupted connection. As above, can you test login via
the welcome page without the use of the proxy server and report back
whether there's any difference?
Thanks,
--nate
This also works normal with the built-in webserver but not as a proxy server.
Thanks,
Matt
> ___________________________________________________________
> Please keep all replies on the list by using "reply all"
> in your mail client. To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>
>
http://lists.bx.psu.edu/