Liisa,

I'm not able to reproduce your issue on our public server. For instance, here's a history that includes both FastQC output and a boxplot; both display correctly:

http://main.g2.bx.psu.edu/u/jeremy/h/unnamed-history-2

(Note that I just committed a fix to galaxy-central so that the images in the FastQC output show up correctly.)

Some questions that might help us figure out the problem:
*can you reproduce your problem on a public Galaxy instance, such as main or test?
*is your Galaxy instance up to date?
*is there something unusual about the datasets that you're using, e.g. are they imported on non-standard in some way?

J.

On Nov 28, 2011, at 1:35 PM, Liisa Koski wrote:

Hi Jeremy,
I'm trying to view boxplots (png) and FastQC (html) output. I  can view other output types like tabular in the published histories, but not png or html.

Thanks,
Liisa

Liisa Koski
Bioinformatics Programmer

Phone: 518-309-3079, E-Mail: liisa.koski@dnalandmarks.ca
Postal Address: DNA LandMarks Inc, St-jean-sur-Richelieu, J3B 6X3 Québec CANADA

DNA LandMarks - une compagnie de BASF Plant Science / a BASF Plant Science company

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From: Jeremy Goecks <jeremy.goecks@emory.edu>
To: Liisa Koski <liisa.koski@dnalandmarks.ca>
Cc: <galaxy-dev@lists.bx.psu.edu>
Date: 2011-11-28 13:23
Subject: Re: [galaxy-dev] Can't view data files from published histories, only imported histories




Liisa,

This functionality works fine in some instances, e.g. for this history:

http://main.g2.bx.psu.edu/u/cartman/h/repeats

I'd guess that it's related to the particular dataset type. What type of dataset are you trying to view when you see this error? Can you view any datasets from the history?

Thanks,
J.

On Nov 28, 2011, at 1:11 PM, Liisa Koski wrote:

Hi,
I found a weird bug. I am trying to view data files by clicking on the 'eye' icon from a published history on my local galaxy installation. When I click on the eye I get a 'Server Error' and in the log file I get the following.

Error - <type 'exceptions.NameError'>: global name 'data' is not defined
URL: http://domain:8080/u/user/d/8bdb720fee635874
File 'galaxy_dist/eggs/Paste-1.6-py2.6.egg/paste/exceptions/errormiddleware.py', line 143 in __call__
 app_iter = self.application(environ, start_response)
File 'galaxy_dist/eggs/Paste-1.6-py2.6.egg/paste/recursive.py', line 80 in __call__
 return self.application(environ, start_response)
File 'galaxy_dist/eggs/Paste-1.6-py2.6.egg/paste/httpexceptions.py', line 632 in __call__
 return self.application(environ, start_response)
File 'galaxy_dist/lib/galaxy/web/framework/base.py', line 160 in __call__
 body = method( trans, **kwargs )
File 'galaxy_dist/lib/galaxy/web/controllers/dataset.py', line 693 in display_by_username_and_slug
 trans.response.set_content_type( data.get_mime() )
NameError: global name 'data' is not defined

If I import the history into my own history pane I can click on the eye and see the data with no errors.

Any ideas how I can see the data from the published histories?

Thanks,
Liisa

Liisa Koski
Bioinformatics Programmer

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