Yeah - I am not very familiar with data source tools at all - sorry.
Are you creating a galaxy.json file in upload3.py? If you are creating
that file but cannot distinguish between the files - I would try
adding "name" or "designation" fields to the JSON lines in that file -
I would think one of those should work.

-John

On Wed, Apr 1, 2015 at 9:07 AM, Daniele P Colobraro
<d.colobraro@gmail.com> wrote:

Thanks John for your help,
if I get it will I set just a external view of my files?
My idea is to provide multiple files in the galaxy history.
I tried to rewrite the 'galaxy.joson' file but without results.
So far, I have made up just the tool below:

upload3.py $report1 $report1.id $__new_file_path__
#if (len(str($url_paste).split(','))>1):
       #for $i in $url_paste:
               $i
       #end for
#else:
       $url_paste
#end if
</command>
<inputs action="link to" check_values="false" method="post">
      </inputs>
<request_param_translation>
<request_param galaxy_name="URL_method" remote_name="URL_method"
missing="post" />
<request_param galaxy_name="URL" remote_name="URL" missing="" />
<request_param galaxy_name="url_paste" remote_name="mclfile[]" missing="txt"
/>
</request_param_translation>
<outputs>
               <data format="txt" name="report1" />
</outputs>

Using this config file I'm able to import multiple files in the galaxy
history.
But I can't set a name to distinguish them.
I am not sure how to proceed.

If you or anyone have other suggestions I will be grateful.

thanks again
Daniele


2015-03-30 2:57 GMT+02:00 John Chilton <jmchilton@gmail.com>:

There was some work last summer to allow something that at least
vaguely sounds like what you are trying to accomplish - though I was
not involved so I probably am unable to help out much. The Trello card
that was tracking progress on this can be found here -
https://trello.com/c/YlADVbkI - and seems to provide some good
details. I am not sure if there is more formal documentation anywhere
though.

Hope this helps,

-John

On Fri, Mar 27, 2015 at 7:34 AM, Daniele P Colobraro
<d.colobraro@gmail.com> wrote:

Hi all,

I've set up a simple tool using the synchronous method to upload a file
on
galaxy.
I'm able to visit the external link, select and upload a file by the
list.
The script that I use is data_source.py and the 'command' part in the
xml
configuration is the same as the ucsc xml config
(ucsc_tablebrowser.xml).
But my purpose is to import multiple files.

Have you any idea how I can set a way to import/upload multiple files by
using the synchronous method?

Thank in advance,
Best regards
Daniele


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