I am trying to import a file into galaxy. On Wed, Jun 29, 2016 at 10:45 AM, Peter Cock <p.j.a.cock@googlemail.com> wrote:
The auto-detection is only used when importing a file into Galaxy (e.g. by uploading it).
If you are writing a tool which produces output in your format, then the tool's XML should specify that output format.
Which of these are you trying to do? Or both?
Peter
On Wed, Jun 29, 2016 at 3:36 PM, Katherine Beaulieu <katherine.beaulieu014@gmail.com> wrote:
Hmm, I must have some sort of other logic error which is preventing the detection of the format. Thanks for the information!
On Wed, Jun 29, 2016 at 10:24 AM, Peter Cock <p.j.a.cock@googlemail.com> wrote:
Have you invented your own file format, or are you using an existing file format defined within Galaxy?
The Galaxy file formats with automatic detection are all defined via Python classes which define a sniff method.
Peter
On Wed, Jun 29, 2016 at 3:15 PM, Katherine Beaulieu <katherine.beaulieu014@gmail.com> wrote:
Hi everyone, I am looking to auto-detect the file format of a file outputted by a python tool I have written. Does anyone have any idea how to do this? I have tried setting the format attribute to "auto" with no luck. Let me know if
you
would like to see my tool config file. Cheers, Katherine
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