Hi Giota, The executable should be placed in a directory on $PATH. You can see what directories those are with: % echo $PATH You can add to $PATH with: % export PATH="/new/dir:$PATH" --nate On Dec 4, 2011, at 3:55 PM, Giota Kottara wrote:
Hi,
I've put the executable in the directory where the xml file and wrapper is. The message I'm getting when I run the tool is Unable to run tool: No such file or directory. I guess that I'm forgetting something....
Subject: Re: [galaxy-user] Upload executable in galaxy From: nate@bx.psu.edu Date: Mon, 28 Nov 2011 13:40:24 -0500 CC: galaxy-dev@bx.psu.edu To: giota_kottara@hotmail.com
On Nov 23, 2011, at 11:10 AM, Giota Kottara wrote:
Dear galaxy developers,
I am trying to integrate an executable tool in a private instance of galaxy. I stored the configuration .xml file and the executable in tools folder of Galaxy and the tool appears in the homepage. Nevertheless when i am running the tool it doesn't seem to find the executable. Am I forgetting something?
Hi Giota,
I've moved this over to the galaxy-dev list since it pertains to tool development.
Executables will need to be on the $PATH of the user running Galaxy. Could you share the error messages you receive when you run the tool?
--nate
Thank you in advance Giota Kottara ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
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