Samual,
We do the same as Peter mentioned.
We generate pdfs or you could generate a mixed datatype html file linking to seperate documents/images (like the fastQC tool).
If you get the export to png working on a headless server without desktop/gui..please let me know. In our hands it only works on full desktop linux environments somehow.
Alex
-----Oorspronkelijk bericht-----
Van: galaxy-dev-bounces@lists.bx.psu.edu [mailto:galaxy-dev-bounces@lists.bx.psu.edu] Namens Samuel Lampa
Verzonden: zondag 16 december 2012 23:14
Aan: Peter Cock
CC: galaxy-dev@lists.bx.psu.edu
Onderwerp: Re: [galaxy-dev] Integrating generated graphics from cli tool?
On 12/14/2012 07:40 PM, Peter Cock wrote:
> On Fri, Dec 14, 2012 at 6:18 PM, Samuel Lampa <samuel.lampa@gmail.com> wrote:
>
> There are existing tools which produce a PDF file as a Galaxy output,
> shown as its own 'green box' in the history. This works quite nicely
> if the browser shows the PDF in-line, but one one of my machines (not
> sure which browser off hand) it insists on downloading the PDF and
> opening it instead - which isn't quite as smooth an interface.
Thanks for the info!
Seems like that could be one way of doing it. I would probably output png rather than pdf, and that might work better.
Best
// Samuel