On Jan 30, 2012, at 1:04 PM, Shantanu Pavgi wrote:
I see following warning messages in galaxy logs after a job finishes up. Does it mean something is misconfigured or a tool did not generate stdout and stderr files?
{{{ galaxy.datatypes.metadata DEBUG 2012-01-30 11:52:07,345 loading metadata from file for: HistoryDatasetAssociation 7 galaxy.jobs DEBUG 2012-01-30 11:52:07,743 job 7 ended galaxy.datatypes.metadata DEBUG 2012-01-30 11:52:07,743 Cleaning up external metadata files galaxy.jobs.runners.drmaa WARNING 2012-01-30 11:52:07,806 Unable to cleanup: [Errno 2] No such file or directory: '/scratch/galaxy_personal_install_files/job_working_directory/000/7/7.drmout' galaxy.jobs.runners.drmaa WARNING 2012-01-30 11:52:07,807 Unable to cleanup: [Errno 2] No such file or directory: '/scratch/galaxy_personal_install_files/job_working_directory/000/7/7.drmerr'
}}}
Are the tools' STDOUT and STDERR being properly read by Galaxy after the job completes? --nate
-- Thanks, Shantanu ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: