Hi, I just tested it in the test-toolshed and for me 'prior_installation_required' is not inserted. Which Galaxy version do you use? Please note, that I'm not sure if that is really causing the trouble you have seen. If you remove the repository dependency everything is working as expected? Am 03.04.2014 12:01, schrieb Janaki Rama Rao Gollapudi:
Hi Bjoern,
Please see my comments inline.
On Thu, Apr 3, 2014 at 3:14 PM, Björn Grüning <bjoern.gruening@gmail.com>wrote:
Hi Janaki,
can you try to remove this prior_installation_required completely?
I didn't added 'prior_installation_required' in the repository_dependencies.xml(as this is optional), it got added when I exported repository files from tool shed. Actual repository_dependencies.xml file has below content.
<?xml version="1.0"?> <repositories description="test description"> <repository name="string_occurrence" owner="janakiram-t1" /> </repositories>
Also why do you need a repository dependency, I think that is not needed or?
This is the first time I working with repository dependencies, so for testing I am trying to add simple repository dependency to my custom tool.
Cheers, Bjoern
Am 03.04.2014 09:30, schrieb Janaki Rama Rao Gollapudi:
Hi Bjoern,
I also exported both the repositories from local toolshed. Please find the attached files.
Thanks, JanakiRam
On Thu, Apr 3, 2014 at 12:50 PM, Janaki Rama Rao Gollapudi < janakiram.gollapudi@india.semanticbits.com> wrote:
Hi,
Thanks for quick reply. Please find the attached .tar file of both the repositories.
Thanks, JanakiRam
On Thu, Apr 3, 2014 at 12:45 PM, Björn Grüning < bjoern.gruening@gmail.com>wrote:
This all seems to be fine, can you send me a tarball with both
repositories ...
Thanks, Bjoern
Am 03.04.2014 09:05, schrieb Janaki Rama Rao Gollapudi:
Hi,
Did anyone faced this issue ?. I struck here. Please suggest me.
Thanks, JanakiRam
On Wed, Apr 2, 2014 at 3:10 PM, Janaki Rama Rao Gollapudi < janakiram.gollapudi@india.semanticbits.com> wrote:
Hi,
> > I have implemented a custom tool called 'barcode-parse' and uploaded > this > custom to into my local tool shed(which is running at > http://localhost:9009). Also able to install this custom tool from > galaxy. > > Then I have added simple repository dependency. I have created a xml > file > 'repository_dependencies.xml'. Then I created a new repository in the > toolShed called 'Test' and uploaded all necessary files(.py, > definition > xml > file and repository dependency xml file) into this repository. (I have > created another repository called 'string_occurrence' and uploaded > necessary files into toolShed which is used as dependency repository) > > <?xml version="1.0"?> > <repositories description=""> > <repository toolshed="http://localhost:9009" > name="string_occurrence" owner="janakiram-t1" /> > </repositories> > > I tried to install custom tool 'barcode-parse' from galaxy, but I got > below error message. > > The repository dependency definitions for this repository are invalid > and > will be ignored. > > I followed the steps mentioned in the galaxy wiki<https://wiki. > galaxyproject.org/SimpleRepositoryDependencies> > > > Am I doing anything wrong? Please suggest me on this. > > Thanks, > JanakiRam > > > >
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