Thanks Peter. I think you are right and that its a change in Galaxy which causes this routing issue. I have prepared a fix for it: https://github.com/galaxyproject/galaxy/compare/dev...guerler:fix_upload_lin.... Ill double check tomorrow with those working on the routing and then issue a PR. Thanks a lot for reporting this Makis. On Mon, Feb 29, 2016 at 8:17 AM, Peter Cock <p.j.a.cock@googlemail.com> wrote:
Thanks for clarifying Makis,
I think this change is likely due to changes in Galaxy rather than in the upload tool itself. On our (slightly out of date) Galaxy or the public server, that URL no longer loads the original tool form - you get the new drag-and-drop upload interface.
I would guess some of the special case code like this matters:
https://github.com/galaxyproject/galaxy/blob/fe6d22e1a7e4e6d38b15f4128554783...
Probably Sam (Aysam) can give you more practical advice (CC'd)?
Peter
I am making some clickable buttons in the home page of my instance
On Mon, Feb 29, 2016 at 12:29 PM, Makis Ladoukakis <makis4ever@hotmail.com> wrote: through a
java script that is called from the welcome.html file. These buttons correspond to my most used tools. For example I have a section like this:
<div align="center" class="container"> <div id='nested_container'> <ul class='list'>
<li class='item'> <div class='my_class_main'><img src="feimg/GetData.gif"/></div> <ul class="sublist"> <li class="subitem"><div class='my_class_sub'><a href="http://myserver/galaxy/tool_runner?tool_id=upload1" target="_parent"><img src="feimg/Upload.gif" width=250% height=300%/></a></div></li> <li class="subitem"><div class='my_class_sub'><a href="http://myserver/galaxy/library/browse_libraries" target="_parent"><img src="feimg/Libraries.gif" width=250% height=300%/></a></div></li> </ul> </li> </ul> </div> </div>
indicating two buttons one for the upload tool and one for the libraries. The libraries button work but when I click on the button for the upload tool the webpage just refreshes instead of opening the tool. This worked perfectly with the previous version of the upload tool and I was thinking how to get it back.
Thank you, Makis
Date: Mon, 29 Feb 2016 11:39:26 +0000 Subject: Re: [galaxy-dev] Downgrade tool upload tool From: p.j.a.cock@googlemail.com To: makis4ever@hotmail.com CC: jen@galaxyproject.org; galaxy-dev@lists.bx.psu.edu; galaxy-dev@lists.galaxyproject.org
Hi Makis,
The upload tool is a little special in that it is used internally by Galaxy and doesn't entirely behave like a normal tool.
What are you trying to achieve by "downgrading" it?
Peter
On Mon, Feb 29, 2016 at 11:29 AM, Makis Ladoukakis <makis4ever@hotmail.com> wrote:
What about if I used a second "tool upload" tool? I took the python script from an earlier version and named it upload_old.py and did the same
for
the xml file (upload.xml -> upload_old.xml) while changing the latter to call the new python script. Nevertheless when I did that and tried to run it I got a popup window with the following error:
Tool request failed
Uncaught exception in exposed API method:
Is there a way to make this work? Or maybe another workaround?
Thank you in advance, Makis
________________________________ From: jen@galaxyproject.org Date: Fri, 26 Feb 2016 10:22:44 -0800 Subject: Re: [galaxy-dev] Downgrade tool upload tool To: makis4ever@hotmail.com CC: galaxy-dev@lists.bx.psu.edu; galaxy-dev@lists.galaxyproject.org
Hello,
The Upload tool is a direct component of Galaxy. To use an earlier version of the tool, I believe that you would have to run an earlier version of Galaxy.
Others here can amend this, if they know of an alternative.
Thanks,
Jen
-- Jennifer Hillman-Jackson Galaxy Application Support http://usegalaxy.org http://galaxyproject.org http://biostar.usegalaxy.org
On Fri, Feb 26, 2016 at 4:01 AM, Makis Ladoukakis <makis4ever@hotmail.com> wrote:
Hello everyone,
I was wondering whether it's possible to downgrade the upload tool to the previous version(1.1.4).
I copied the upload.py and upload.xml scripts from a previous galaxy version to the tools/data_source/ directory and reloaded the tool as admin but it hasn't changed even when I restarted the server.
Do I have to change something else in addition?
Thank you, Makis
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