I'm following up on my previous email. I somehow managed to get `planemo shed_update` to work but now I seem to have an inconsistent view of the Test toolshed. This is how it looks from the Admin panel of my Galaxy server:

Notice that it shows 3 installable revisions for the data manager, last updated 13th of September. And this is how it looks from the Test toolshed website:


Notice that it has 6 installabale revisions for the data manager. Is my Galaxy server perhaps caching something?


On Sat, 15 Sep 2018 at 09:57 Peter van Heusden <pvh@sanbi.ac.za> wrote:
Hi there

I'm working on a data manager to keep track of the reference data collection used by the SHAPEIT2 tool. I had to add a column to the data manager but when I try and do a `planemo shed_update` I get the error:

Unexpected HTTP status code: 500: {"err_msg": "Error attempting to parse file tool_data_table_conf.xml.sample: Merging tabular data tables with non matching columns is not allowed: shapeit_ref:{'path': 2, 'reference_prefix': 3, 'name': 1, 'value': 0, 'map_prefix': 4} != shapeit_ref:{'name': 1, 'value': 0, 'sample_prefix': 5, 'path': 2, 'reference_prefix': 3, 'map_prefix': 4}"}

This is for data_manager_shapeit_reference in testtoolshed, which is on github at


As far as I can tell the columns do accord. Is there any way to see which files are being merged to help try and debug this error?