Hi Dannon,

I visited admin panel of http://<my_ec2_instance>/cloud/admin

Under Add Galaxy admin users, I typed my email and pushed the "Add admin users" tab.

I get the following message,

Either no acceptable admin values provided ([]) or Galaxy service not found

Current Galaxy admin remains as cloud@galaxyproject.org.

Where do I go wrong?

How do I create the new admin user?

Best wishes,

Anto

From: Dannon Baker [dannon.baker@gmail.com]
Sent: 16 August 2013 14:04
To: Anto Praveen Rajkumar Rajamani
Cc: galaxy-dev@bx.psu.edu
Subject: Re: [galaxy-dev] Is there a way to install a tool from toolshed in cloudman without using commands?

Hi Anto,

Yes, you should be able to create an admin user for your galaxy installation via the cloudman admin panel (http://<your_ec2_instance>/cloud/admin) in as an admin. Once you're an admin user, you'll see the toolshed installation stuff in the galaxy admin panel.

-Dannon

On Fri, Aug 16, 2013 at 6:03 AM, Anto Praveen Rajkumar Rajamani <APR@hum-gen.au.dk> wrote:

Hello,

I launched a new Cloudman instance last week to analyse my RNA-seq data.

I uploaded and cleaned my data, but could not run Tophat and Cufflinks due to the "Broken symbolic links" problem (https://bitbucket.org/galaxy/cloudman/issue/6/tool-default-symbolic-links-to-mnt).

I have completed running Tophat2 on the public server.

Now, I like to install edgeR (http://toolshed.g2.bx.psu.edu/repository?repository_id=0c447003da85ae19) from the toolshed for further analyses.

I cannot find a way to install that tool in my cloudman instance.

My background is in psychiatry and I do not have any knowledge of Linux commands.

Is there a way to install a tool (edgeR) from the toolshed without using command lines?

Any help is greatly appreciated.

Thank you.

Best wishes,

Anto

Anto Rajkumar, MD, DNB, MRCPsych,
PhD fellow, Department of Biomedicine,
Aarhus university,
8000 C, Aarhus, Denmark.
Ph (office) : 045- 87167292
E-mail: APR@hum-gen.au.dk

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