Hi Nikos,
Hi all
I installed bismark from the toolshed (bgruening) with all dependencies having been installed successfully and I generated the genomes according to the instructions.
While trying to test the tool I got the following error.
galaxy.jobs.handler ERROR 2013-09-04 13:14:26,267 Failed to generate job destination Traceback (most recent call last): File "/steno-internal/projects/galaxy/galaxy-dist/lib/galaxy/jobs/handler.py", line 287, in __check_if_ready_to_run self.job_wrappers[job.id].job_destination File "/steno-internal/projects/galaxy/galaxy-dist/lib/galaxy/jobs/__init__.py", line 617, in job_destination return self.job_runner_mapper.get_job_destination(self.params) File "/steno-internal/projects/galaxy/galaxy-dist/lib/galaxy/jobs/mapper.py", line 163, in get_job_destination self.__cache_job_destination( params ) File "/steno-internal/projects/galaxy/galaxy-dist/lib/galaxy/jobs/mapper.py", line 148, in __cache_job_destination raw_job_destination = self.job_wrapper.tool.get_job_destination( params ) AttributeError: 'NoneType' object has no attribute 'get_job_destination' galaxy.datatypes.metadata DEBUG 2013-09-04 13:14:26,905 Cleaning up external metadata files galaxy.jobs.handler ERROR 2013-09-04 13:14:27,034 (1316) Error checking job readiness
that does not look like a bismark error. Is it happen with other tools as well?
I'm using the old style job configuration (the one in universe_wsgi.ini). Could that be the issue?
Not sure, sorry. But you should migrate to the new job configuration, better sooner than later. Cheers, Bjoern
Bests, Nikos ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
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