
Hi all, I'm wondering why my samtools_depad repository tests have failed, and since I have not changed this recently presume this is due to a Galaxy change or general TestToolShed problem not specific to my tool: https://testtoolshed.g2.bx.psu.edu/view/peterjc/samtools_depad Tests that failed Tool id: samtools_depad Tool version: samtools_depad Test: test_tool_000000 (functional.test_toolbox.TestForTool_testtoolshed.g2.bx.psu.edu/repos/peterjc/samtools_depad/samtools_depad/0.0.1) Stderr: Traceback: Traceback (most recent call last): File "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/test/functional/test_toolbox.py", line 114, in test_tool self.do_it( td ) File "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/test/functional/test_toolbox.py", line 35, in do_it self._verify_outputs( testdef, test_history, shed_tool_id, data_list, galaxy_interactor ) File "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/test/functional/test_toolbox.py", line 75, in _verify_outputs galaxy_interactor.verify_output( history, output_data, output_testdef=output_testdef, shed_tool_id=shed_tool_id, maxseconds=maxseconds ) File "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/test/base/interactor.py", line 82, in verify_output self._verify_metadata( history_id, hid, attributes ) File "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/test/base/interactor.py", line 103, in _verify_metadata raise Exception( msg ) Exception: Dataset metadata verification for [file_ext] failed, expected [bam] but found [None]. Traceback (most recent call last): File "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/lib/galaxy/web/framework/decorators.py", line 243, in decorator rval = func( self, trans, *args, **kwargs) File "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/lib/galaxy/webapps/galaxy/api/history_contents.py", line 188, in show return self.__show_dataset( trans, id, **kwd ) File "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/lib/galaxy/webapps/galaxy/api/history_contents.py", line 214, in __show_dataset hda_dict[ 'display_apps' ] = self.get_display_apps( trans, hda ) File "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/lib/galaxy/web/base/controller.py", line 855, in get_display_apps for display_app in hda.get_display_applications( trans ).itervalues(): File "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/lib/galaxy/model/__init__.py", line 1754, in get_display_applications return self.datatype.get_display_applications_by_dataset( self, trans ) File "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/lib/galaxy/datatypes/data.py", line 445, in get_display_applications_by_dataset value = value.filter_by_dataset( dataset, trans ) File "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/lib/galaxy/datatypes/display_applications/application.py", line 200, in filter_by_dataset if link_value.filter_by_dataset( data, trans ): File "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/lib/galaxy/datatypes/display_applications/application.py", line 78, in filter_by_dataset if fill_template( filter_elem.text, context = context ) != filter_elem.get( 'value', 'True' ): File "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/lib/galaxy/util/template.py", line 9, in fill_template return str( Template( source=template_text, searchList=[context] ) ) File "/var/opt/buildslaves/buildslave-ec2-2/buildbot-install-test-test-tool-shed-py27/build/eggs/Cheetah-2.2.2-py2.7-linux-x86_64-ucs4.egg/Cheetah/Template.py", line 1004, in __str__ return getattr(self, mainMethName)() File "cheetah_DynamicallyCompiledCheetahTemplate_1410263883_33_43576.py", line 82, in respond NotFound: cannot find 'ucsc_display_sites' while searching for 'APP.config.ucsc_display_sites' requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/993bad2fe35335db/contents/7fbe67cfae825002?key=edc04240db9605fb7edc7bab44d3404c HTTP/1.1" 500 None requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): 127.0.0.1 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/993bad2fe35335db/contents/7fbe67cfae825002/provenance?key=edc04240db9605fb7edc7bab44d3404c HTTP/1.1" 200 None requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): 127.0.0.1 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/993bad2fe35335db/contents/7fbe67cfae825002/provenance?key=edc04240db9605fb7edc7bab44d3404c HTTP/1.1" 200 None Any thoughts? Thanks, Peter