Hi all,
I created data libraries using options "Upload files from
filesystem paths" and "Link to files without copying into
Galaxy".
It worked but I use symbolic links because my data are frequently
updated
The problem is that Galaxy takes the real link (inside
"external_filename" column in "dataset" table) and doesn't find
the
files when it is deleted.
For example, I uploaded a dataset for a data library without
copying : /databank/uniprot/current/fasta/all.fasta ->
/databank/uniprot/01_12_2012/fasta/all.fasta
The real path is put in the database and it's a problem when it is
deleted.
Is there a way for galaxy to take the symbolic link directly in
the database instead of the real path.
Thanks in advance!
Cheers,
--
Cyril Monjeaud
Equipe Symbiose / Plate-forme GenOuest
Bureau D156
IRISA-INRIA, Campus de Beaulieu
35042 Rennes cedex, France
Tél: +33 (0) 2 99 84 74 17
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