This is something our research group is interested in, but it's not possible to specify which cluster the particular tool should run on ahead of time.
Incorrect (at least to my knowledge). Using the new way jobs are handled within Galaxy via the XML[1] files you can send specific jobs to specific destinations which could be different "clusters." For our cluster, we handle the file uploading "tool" to a different job runner then the cluster (SGE). This was accomplished by <tools> <tool id="upload1" destination="local"/> </tools> where id is the galaxy tool id and destination is where the tool should be ran, cluster, local, etc. [1] http://wiki.galaxyproject.org/Admin/Config/Jobs -- Adam Brenner Computer Science, Undergraduate Student Donald Bren School of Information and Computer Sciences Research Computing Support Office of Information Technology http://www.oit.uci.edu/rcs/ University of California, Irvine www.ics.uci.edu/~aebrenne/ aebrenne@uci.edu On Fri, Jul 12, 2013 at 11:42 AM, Saliya Ekanayake <esaliya@gmail.com> wrote:
Hi,
I see in documentation that Galaxy tools may be configured to run on a cluster (http://wiki.galaxyproject.org/Admin/Config/Performance/Cluster). This is something our research group is interested in, but it's not possible to specify which cluster the particular tool should run on ahead of time.
Therefore, is it possible to specify the cluster to run when the tool is actually being used when composing the workflow from Galaxy?
Thank you, Saliya
-- Saliya Ekanayake esaliya@gmail.com Cell 812-391-4914 Home 812-961-6383 http://saliya.org
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