On Thu, May 30, 2013 at 10:30 AM, Joachim Jacob | VIB | <joachim.jacob@vib.be> wrote:
Unfortunately, updating to the latest code (9320:47ddf167c9f1) does not solve the problem.
I may be seeing the same issue on the Test Tool Shed, which suggests a recent regression: This is for the NCBI BLAST+ tools, attempting to compile from source: Installation errors - no functional tests were run for any tools in this changeset revision Type Name Version blast+ package 2.2.26+ Error [Errno 2] No such file or directory: '/var/opt/buildslaves/buildslave-ec2-1/buildbot-install-test-test-tool-shed-py27/build/test/install_and_test_tool_shed_repositories/tmp/tmpOASYB_/tmpkEDmTH/ncbi-blast-2.2.26+-src.tar.gz' http://testtoolshed.g2.bx.psu.edu/view/peterjc/ncbi_blast_plus/c1a6e5aefee0 <?xml version="1.0"?> <tool_dependency> <package name="blast+" version="2.2.26+"> <install version="1.0"> <actions> <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-src.tar.gz</action> <action type="shell_command">cd c++ && ./configure --prefix=$INSTALL_DIR && make && make install</action> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> </action> </actions> </install> <readme> Downloads and compiles BLAST+ from the NCBI, which assumes you have all the required build dependencies installed. See: http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&... </readme> </package> </tool_dependency> This was based on an older working tool_dependencies.xml file, and other than the comments should match that currently on the main tool shed, where it was working: http://toolshed.g2.bx.psu.edu/view/devteam/ncbi_blast_plus/9dabbfd73c8a <?xml version="1.0"?> <tool_dependency> <package name="blast+" version="2.2.26+"> <install version="1.0"> <actions> <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-src.tar.gz</action> <action type="shell_command">cd c++ && ./configure --prefix=$INSTALL_DIR && make && make install</action> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> </action> </actions> </install> <readme> These links provide information for building the NCBI Blast+ package in most environments. System requirements http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&... </readme> </package> </tool_dependency> Peter