Hi Sam, thanks for the answer. So far I have not configured anything, I was hoping that it works out of the box :). Could you point me to some documentation where the setup is explained? Best, Matthias On 25.08.2017 19:05, Aysam Guerler wrote:
Hi Matthias,
Have you added the visulization to Charts or the regular Galaxy visualization framework? If it is the latter please make sure that you correctly specified the datatype in your XML file. Your visualization should than appear in the drop-down list in the history.
Thanks, Sam
On Fri, Aug 25, 2017 at 5:25 AM, Matthias Bernt <m.bernt@ufz.de <mailto:m.bernt@ufz.de>> wrote:
Dear list,
I can not get the wonderful unipept visualization to work on our Galaxy instance (a test instance on the dev branch). I get the message: "Unfortunately we could not identify a suitable plugin...."
The file I try to visualize was generated by unipept (pept2lca) and is of format d3_hierarchy.
Could someone tell me if I need to install / configure something to get this running?
Thanks a lot.
Best, Matthias
P.S. This might be also of interest for others, since this visualization is used in the Metaproteomics tutorial of the GTN.
--
------------------------------------------- Matthias Bernt Bioinformatics Service Molekulare Systembiologie (MOLSYB) Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/ Helmholtz Centre for Environmental Research GmbH - UFZ Permoserstraße 15, 04318 Leipzig, Germany Phone +49 341 235 482296 <tel:%2B49%20341%20235%20482296>, m.bernt@ufz.de <mailto:m.bernt@ufz.de>, www.ufz.de <http://www.ufz.de>
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-- ------------------------------------------- Matthias Bernt Bioinformatics Service Molekulare Systembiologie (MOLSYB) Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/ Helmholtz Centre for Environmental Research GmbH - UFZ Permoserstraße 15, 04318 Leipzig, Germany Phone +49 341 235 482296, m.bernt@ufz.de, www.ufz.de Sitz der Gesellschaft/Registered Office: Leipzig Registergericht/Registration Office: Amtsgericht Leipzig Handelsregister Nr./Trade Register Nr.: B 4703 Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board: MinDirig Wilfried Kraus Wissenschaftlicher Geschäftsführer/Scientific Managing Director: Prof. Dr. Dr. h.c. Georg Teutsch Administrative Geschäftsführerin/ Administrative Managing Director: Prof. Dr. Heike Graßmann -------------------------------------------