Still waiting on a reply! Any suggestion is appreciated.

On Tue, Feb 26, 2013 at 1:55 PM, Mahtab Mirmomeni <m.mirmomeni@student.unimelb.edu.au> wrote:

Hi all,

I have installed Deseq (by vipints) from the main galaxy toolshed and have followed the make instructions but I'm still not unable to run it inside Galaxy and I get the following error. 

(Path is the path to our local galaxy instance)

error: get_read_counts: Path/shed_tools/toolshed.g2.bx.psu.edu/repos/vipints/deseq_hts/2b3bb3348076/deseq_hts/deseq-hts_1.0/mex/get_reads.mex: failed to load: /mnt/all/cloudman/galaxy/clare/shed_tools/toolshed.g2.bx.psu.edu/repos/vipints/deseq_hts/2b3bb3348076/deseq_hts/deseq-hts_1.0/mex/get_reads.mex: undefined symbol: bam_index_destroy
error: called from:
error:   Path/shed_tools/toolshed.g2.bx.psu.edu/repos/vipints/deseq_hts/2b3bb3348076/deseq_hts/deseq-hts_1.0/src/get_read_counts.m at line 97, column 34
starting Octave failed

I should add that I can run octave from command line and it seems to be working.

Any suggestions is much appreciated.

Thanks

Mahtab

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