On Tue, Jul 20, 2010 at 3:42 PM, Roger Kapul <
rkapul@gmail.com> wrote:
> Hello,
>
> I'm running a fresh install of Ubuntu 10.04 LTS, python version 2.6 and
> numpy version 1.3.0 and I get this error when I try to run galaxy on my
> machine. I downloaded and installed galaxy by following the steps on the
> wiki and used the mercurial repository to download it.
>
> galaxy.web.framework.base DEBUG 2010-07-20 12:36:28,494 Enabling 'async'
> controller, class: ASync
> Traceback (most recent call last):
> File "./scripts/paster.py", line 34, in <module>
> command.run()
> File
> "/home/roger/galaxy-python/galaxy_dist/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/command.py",
> line 84, in run
> invoke(command, command_name, options, args[1:])
> File
> "/home/roger/galaxy-python/galaxy_dist/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/command.py",
> line 123, in invoke
> exit_code = runner.run(args)
> File
> "/home/roger/galaxy-python/galaxy_dist/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/command.py",
> line 218, in run
> result = self.command()
> File
> "/home/roger/galaxy-python/galaxy_dist/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/serve.py",
> line 276, in command
> relative_to=base, global_conf=vars)
> File
> "/home/roger/galaxy-python/galaxy_dist/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/serve.py",
> line 313, in loadapp
> **kw)
> File
> "/home/roger/galaxy-python/galaxy_dist/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/loadwsgi.py",
> line 204, in loadapp
> return loadobj(APP, uri, name=name, **kw)
> File
> "/home/roger/galaxy-python/galaxy_dist/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/loadwsgi.py",
> line 225, in loadobj
> return context.create()
> File
> "/home/roger/galaxy-python/galaxy_dist/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/loadwsgi.py",
> line 625, in create
> return self.object_type.invoke(self)
> File
> "/home/roger/galaxy-python/galaxy_dist/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/loadwsgi.py",
> line 110, in invoke
> return fix_call(context.object, context.global_conf,
> **context.local_conf)
> File
> "/home/roger/galaxy-python/galaxy_dist/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/util/fixtypeerror.py",
> line 57, in fix_call
> val = callable(*args, **kw)
> File "/home/roger/galaxy-python/galaxy_dist/lib/galaxy/web/buildapp.py",
> line 90, in app_factory
> add_controllers( webapp, app )
> File "/home/roger/galaxy-python/galaxy_dist/lib/galaxy/web/buildapp.py",
> line 39, in add_controllers
> module = __import__( module_name )
> File
> "/home/roger/galaxy-python/galaxy_dist/lib/galaxy/web/controllers/tracks.py",
> line 27, in <module>
> from galaxy.visualization.tracks.data.array_tree import
> ArrayTreeDataProvider
> File
> "/home/roger/galaxy-python/galaxy_dist/lib/galaxy/visualization/tracks/data/array_tree.py",
> line 8, in <module>
> from bx.arrays.array_tree import FileArrayTreeDict
> File "numpy.pxd", line 119, in init bx.arrays.array_tree
> (lib/bx/arrays/array_tree.c:11323)
> ValueError: numpy.dtype does not appear to be the correct type object
>
>
> Any advice?
>
> Thank you
> Roger
>