Hello Kevin, On Sep 14, 2012, at 3:48 AM, kevyin wrote:
Hi, I have a tool on the main galaxy toolshed called fastq_groomer_parallel. During an update, with a new tar.gz upload I accidentally included in an unrelated big folder of stuff under the folder build/
The upload failed (with no helpful error message, only to turn on debug mode) I went and browsed the files via the web interface and the folder is there, but when I tried to delete it it says "No changes to repository. " Everything is normal, ie I can install this from a galaxy instance and the build/ folder is not there. when I hg pull and push etc the folder is not there.
I'm not sure how you were seeing anything related to a large folder named "build". Looking at you change log, I see the following changeset revisions, none of which include this folder. Description: First upload 0.3.0 Commit: 0:18a08d476d5e added: README fastq_groomer_parallel.py fastq_groomer_parallel.xml Description: Deleted selected files Commit: 1:2f394cd7db91 removed: README fastq_groomer_parallel.py fastq_groomer_parallel.xml Description: Uploaded Commit: 2:cac848910bd8 added: README fastq_groomer_parallel.py fastq_groomer_parallel.xml
I have another question with versioning. So far with my experimentation on the testtoolshed, The version is only bumped when I upload via an archive not when I push to the repo. Is this meant to be the case?
This is probably not the case. A new change set is created every time you make a change to the repository, either by uploading something new or by deleting one or more files. Whenever a new change set is produced, it is associated with a revision number and string. The following sections of the tool shed wiki may provide more clarification. http://wiki.g2.bx.psu.edu/Tool%20Shed#The_mercurial_repository_change_log http://wiki.g2.bx.psu.edu/Tool%20Shed#Repository_revisions:_uploading_a_new_... http://wiki.g2.bx.psu.edu/Tool%20Shed#Repository_revisions:_valid_tool_versi...
Also "Get Updates" to a toolshed tool as a galaxy Admin. doesnt seem to work, I basically have to install a new instance again, is this normal?
It depends - the following section of the tool shed wiki should clarify this: http://wiki.g2.bx.psu.edu/Tool%20Shed#Getting_updates_for_tool_shed_reposito... Greg Von Kuster
Regards, Kevin.
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