SHAUN WEBB wrote:
Hi Nate.
Could you provide more info on how to run this script. I have a history and dataset name and I want to find the file stored on the server.
Hi Shaun, You'll need the dataset ID, which you can see as part of the URL of many of the links in the history item. For example, the URL linked by the "eye" icon is: http://server/datasets/1cd8e2f6b131e891/display/?preview=True Using the ID of 1cd8e2f6b131e891, run: % python helper.py --hda=1cd8e2f6b131e891 HDA "3" is Dataset "3" at: /galaxy/database/files/000/dataset_3.dat --nate
Thanks Shaun
Thanks Assaf,
This has come up enough times that I've just committed a script that will return the filename if provided a numeric or encoded HDA. I've posted it to the list before as galaxythinger.py, it's in the source as galaxy-dist/scripts/helper.py as of 5919:0f878ea61e98.
It will also decode and encode IDs. More functionality for common sysadmin tasks would be welcomed.
--nate
hope this helps, -gordon
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
-- The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336.